List of works - Sheeba Samuel

A Provenance-based Semantic Approach to Support Understandability, Reproducibility, and Reuse of Scientific Experiments

Doctoral Thesis

A collaborative semantic-based provenance management platform for reproducibility

scientific article published on 10 March 2022

A virtual “Werkstatt” for digitization in the sciences

scholarly article by Sheeba Samuel et al published 11 May 2020 in Research Ideas and Outcomes

Automating Information Retrieval from Biodiversity Literature Using Large Language Models: A Case Study

scientific article published in 2024

BiodivNERE: Gold standard corpora for named entity recognition and relation extraction in the biodiversity domain

scientific article published in 2022

Combining P-Plan and the REPRODUCE-ME Ontology to Achieve Semantic Enrichment of Scientific Experiments Using Interactive Notebooks ⬇️

Scientific article published in 2018

Computational reproducibility of Jupyter notebooks from biomedical publications ⬇️

scientific article published on 9 September 2022

Computational reproducibility of Jupyter notebooks from biomedical publications

scientific article published in January 2024

Dataset of a Study of Computational reproducibility of Jupyter notebooks from biomedical publications

End-to-End provenance representation for the understandability and reproducibility of scientific experiments using a semantic approach

scientific article published on 06 January 2022

FAIR Jupyter: A Knowledge Graph Approach to Semantic Sharing and Granular Exploration of a Computational Notebook Reproducibility Dataset

scientific article published in January 2024

How Reproducible are the Results Gained with the Help of Deep Learning Methods in Biodiversity Research?

scientific article published on 14 September 2023

Integrating Domain Knowledge for Enhanced Concept Model Explainability in Plant Disease Classification

Integrative Data Management for Reproducibility of Microscopy Experiments

ProvBook: Provenance-based Semantic Enrichment of Interactive Notebooks for Reproducibility. ⬇️

Scientific article published in 2018

REPRODUCE-ME: Ontology-Based Data Access for Reproducibility of Microscopy Experiments

ReproduceMeGit: A Visualization Tool for Analyzing Reproducibility of Jupyter Notebooks ⬇️

article published in 2020

The Story of an experiment: a provenance-based semantic approach towards research reproducibility ⬇️

The role of ontology matching in ontology network development ⬇️

scientific article published on 14 December 2023

Tiotropium bromide: a new long-acting bronchodilator for the treatment of chronic obstructive pulmonary disease

scientific article

Towards Reproducibility of Microscopy Experiments

Understanding experiments and research practices for reproducibility: an exploratory study