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List of works by Francesco Asnicar

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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 August 2019
Compact graphical representation of phylogenetic data and metadata with GraPhlAn

scientific article
Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling

scientific article published on 17 January 2017
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

scientific article published on 01 April 2019
Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis

scientific article
Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 September 2019
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

Uncovering oral Neisseria tropism and persistence using metagenomic sequencing

scientific article
Endogenous murine microbiota member Faecalibaculum rodentium and its human homologue protect from intestinal tumour growth

scientific article published on 27 January 2020
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea

scientific article published on 02 December 2019
Detecting contamination in viromes using ViromeQC

scientific article published on 01 December 2019
Human postprandial responses to food and potential for precision nutrition

scientific article published on 11 June 2020
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0.

scientific article published on 19 May 2020
Author Correction: Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

scientific article published on 01 December 2019
Publisher Correction: Human postprandial responses to food and potential for precision nutrition

scientific article published on 20 October 2020
Gut microbiome signatures of vegan, vegetarian and omnivore diets and associated health outcomes across 21,561 individuals

scientific article published on 6 January 2025
A Computing System for Discovering Causal Relationships Among Human Genes to Improve Drug Repositioning

scientific article published in 2021
Gut vascular barrier impairment leads to intestinal bacteria dissemination and colorectal cancer metastasis to liver

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

Effects of a personalized nutrition program on cardiometabolic health: a randomized controlled trial

scientific article published on 8 May 2024
Menopause is associated with postprandial metabolism, metabolic health and lifestyle: The ZOE PREDICT study

scientific article published in November 2022
Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma

scientific article published on 28 February 2022
Coffee consumption is associated with intestinal Lawsonibacter asaccharolyticus abundance and prevalence across multiple cohorts

scientific article published on 18 November 2024
Personalised REsponses to DIetary Composition Trial (PREDICT): an intervention study to determine inter-individual differences in postprandial response to foods

Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals

PHLAME: A benchmark for continuous evaluation of host phenotype prediction from shotgun metagenomic data

Discovering and exploring the hidden diversity of human gut viruses using highly enriched virome samples

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