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List of works by René L Warren

ARCS: scaffolding genome drafts with linked reads.

scientific article published on 23 October 2017

Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics' GemCode Sequencing Data.

scientific article

Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim

scientific article published in January 2023

ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data.

scientific article published on 29 December 2017

Establishing association between <i>HLA‐C*04:01</i> and severe <scp>COVID</scp>‐19

scientific article published in January 2024

GapPredict - A Language Model for Resolving Gaps in Draft Genome Assemblies

scientific article published on 01 November 2021

Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism

scientific article published on 28 May 2015

Konnector v2.0: pseudo-long reads from paired-end sequencing data

scientific article

LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads.

scientific article published on 4 August 2015

Linear time complexity de novo long read genome assembly with GoldRush

scientific article published on 22 May 2023

Mining Amphibian and Insect Transcriptomes for Antimicrobial Peptide Sequences with rAMPage

scientific article published in 2022

Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation

scientific article published on 8 December 2015

RAILS and Cobbler: Scaffolding and automated finishing of draft genomes using long DNA sequences

scientific article published on 17 November 2016

Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2

scientific article published on 22 May 2023

Retrospective in silico HLA predictions from COVID-19 patients reveal alleles associated with disease prognosis

scientific article published on 02 November 2020

Sealer: a scalable gap-closing application for finishing draft genomes.

scientific article published on 25 July 2015

Spruce giga‐genomes: structurally similar yet distinctive with differentially expanding gene families and rapidly evolving genes

scientific article published in 2022

The North American bullfrog draft genome provides insight into hormonal regulation of long noncoding RNA.

scientific article

Visualizing genome synteny with xmatchview

scientific article published on 19 January 2018

ntEdit: scalable genome sequence polishing

scientific article published on 01 November 2019

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