List of works - Kévin Rue-Albrecht

Comparative functional genomics and the bovine macrophage response to strains of the mycobacterium genus

scientific article

Comparative ’omics analyses differentiateMycobacterium tuberculosisandMycobacterium bovisand reveal distinct macrophage responses to infection with the human and bovine tubercle bacilli

article

Correlation of disorder between S. cerevisiae interacting proteins

scientific article published on 23 November 2011

Experimental infection of cattle with Mycobacterium tuberculosis isolates shows the attenuation of the human tubercle bacillus for cattle.

scientific article published on 17 January 2018

GOexpress: an R/Bioconductor package for the identification and visualisation of robust gene ontology signatures through supervised learning of gene expression data

scientific article

Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle

scientific article

High-throughput transcriptomics reveals common and strain-specific responses of human macrophages to infection with Mycobacterium abscessus Smooth and Rough variants

scientific article published on 9 December 2015

IL-1-driven stromal-neutrophil interactions define a subset of patients with inflammatory bowel disease that does not respond to therapies

scientific article published on 21 October 2021

Integrated computational prediction and experimental validation identifies promiscuous T cell epitopes in the proteome of Mycobacterium bovis

scientific article published on 25 August 2016

Invasive Salmonella exploits divergent immune evasion strategies in infected and bystander dendritic cell subsets

scientific article published in Nature Communications

Orchestrating Single-Cell Analysis with Bioconductor

Orchestrating single-cell analysis with Bioconductor

scientific article published on 02 December 2019

Plasma Metabolomics Implicates Modified Transfer RNAs and Altered Bioenergetics in the Outcomes of Pulmonary Arterial Hypertension.

scientific article

Publisher Correction: Orchestrating single-cell analysis with Bioconductor

scientific article published on 01 February 2020

RNA sequencing (RNA-seq) reveals extremely low levels of reticulocyte-derived globin gene transcripts in peripheral blood from horses (Equus caballus) and cattle (Bos taurus)

article

RNA sequencing provides exquisite insight into the manipulation of the alveolar macrophage by tubercle bacilli

scientific article

RNA-seq Transcriptional Profiling of Peripheral Blood Leukocytes from Cattle Infected with Mycobacterium bovis

scientific article

The Short Chain Fatty Acid Butyrate Imprints an Antimicrobial Program in Macrophages

scientific article published on 23 January 2019

The bovine alveolar macrophage DNA methylome is resilient to infection with Mycobacterium bovis

scientific article published in Scientific Reports

TreeSummarizedExperiment: a S4 class for data with hierarchical structure

scientific article published on 15 October 2020

Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro

scientific article

iSEE: Interactive SummarizedExperiment Explorer.

scientific article published on 14 June 2018

List of works by Kévin Rue-Albrecht

Comparative functional genomics and the bovine macrophage response to strains of the mycobacterium genus

Comparative ’omics analyses differentiateMycobacterium tuberculosisandMycobacterium bovisand reveal distinct macrophage responses to infection with the human and bovine tubercle bacilli

Correlation of disorder between S. cerevisiae interacting proteins

Experimental infection of cattle with Mycobacterium tuberculosis isolates shows the attenuation of the human tubercle bacillus for cattle.

GOexpress: an R/Bioconductor package for the identification and visualisation of robust gene ontology signatures through supervised learning of gene expression data

Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle

High-throughput transcriptomics reveals common and strain-specific responses of human macrophages to infection with Mycobacterium abscessus Smooth and Rough variants

IL-1-driven stromal-neutrophil interactions define a subset of patients with inflammatory bowel disease that does not respond to therapies

Integrated computational prediction and experimental validation identifies promiscuous T cell epitopes in the proteome of Mycobacterium bovis

Invasive Salmonella exploits divergent immune evasion strategies in infected and bystander dendritic cell subsets

Orchestrating Single-Cell Analysis with Bioconductor

Orchestrating single-cell analysis with Bioconductor

Plasma Metabolomics Implicates Modified Transfer RNAs and Altered Bioenergetics in the Outcomes of Pulmonary Arterial Hypertension.

Publisher Correction: Orchestrating single-cell analysis with Bioconductor

RNA sequencing (RNA-seq) reveals extremely low levels of reticulocyte-derived globin gene transcripts in peripheral blood from horses (Equus caballus) and cattle (Bos taurus)

RNA sequencing provides exquisite insight into the manipulation of the alveolar macrophage by tubercle bacilli

RNA-seq Transcriptional Profiling of Peripheral Blood Leukocytes from Cattle Infected with Mycobacterium bovis

The Short Chain Fatty Acid Butyrate Imprints an Antimicrobial Program in Macrophages

The bovine alveolar macrophage DNA methylome is resilient to infection with Mycobacterium bovis

The bovine alveolar macrophage DNA methylome is resilient to infection with Mycobacterium bovis

TreeSummarizedExperiment: a S4 class for data with hierarchical structure

Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro

iSEE: Interactive SummarizedExperiment Explorer.