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List of works by Alexander Favorov

A promoter-level mammalian expression atlas

scientific article

Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers

scientific article published on 16 May 2019

Chromatin structure regulates cancer-specific alternative splicing events in primary HPV-related oropharyngeal squamous cell carcinoma

scientific article published on 22 March 2020

Differential Variation Analysis Enables Detection of Tumor Heterogeneity Using Single-Cell RNA-Sequencing Data

scientific article published on 23 July 2019

Differentially Methylated Super-Enhancers Regulate Target Gene Expression in Human Cancer

scientific article published on 21 October 2019

Enter the matrix: factorization uncovers knowledge from omics

Exploring massive, genome scale datasets with the GenometriCorr package

scientific article

Functional annotation of human long noncoding RNAs via molecular phenotyping

scientific article published on 27 July 2020

Functional characterization of alternatively spliced GSN in head and neck squamous cell carcinoma

scientific article published on 26 July 2018

Integrated analysis of whole-genome ChIP-Seq and RNA-Seq data of primary head and neck tumor samples associates HPV integration sites with open chromatin marks

scientific article published on 25 September 2017

Motif discovery and motif finding from genome-mapped DNase footprint data

scientific article

Newly identified members of fibroblast growth factor receptor 1 splice variants engage in crosstalk with the AXL/AKT axis in salivary adenoid cystic carcinoma

scientific article published on 06 January 2021

Publisher Correction: Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers.

scientific article published on 29 May 2019

Recounting the FANTOM CAGEAssociated Transcriptome

scientific article published on 20 February 2020

Senescence and entrenchment in evolution of amino acid sites

scientific article published on 14 September 2020

StereoGene: Rapid Estimation of Genomewide Correlation of Continuous or Interval Feature Data

article

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