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List of works by Daniel Wilson

A modified RNA-Seq approach for whole genome sequencing of RNA viruses from faecal and blood samples

scientific article

A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance

scientific article (publication date: 2012)

Application of machine learning techniques to tuberculosis drug resistance analysis

scholarly article by Samaneh Kouchaki et al published 21 November 2018 in Bioinformatics

Bayesian inference of ancestral dates on bacterial phylogenetic trees

Broad-scale recombination patterns underlying proper disjunction in humans

scientific article published on 18 September 2009

Coalescent inference for infectious disease: meta-analysis of hepatitis C.

scientific article published on 04 February 2013

Combining genomics and epidemiology to analyse bi-directional transmission of in a multi-host system

scientific article published on 17 December 2019

DeepAMR for predicting co-occurrent resistance of Mycobacterium tuberculosis

scholarly article by Yang Yang et al published 28 January 2019 in Computer applications in the biosciences : CABIOS

Detection of mixed infection from bacterial whole genome sequence data allows assessment of its role in Clostridium difficile transmission

scientific article (publication date: 2013)

Different selective pressures shape the evolution of Toll-like receptors in human and African great ape populations

scientific article

Diverse sources of C. difficile infection identified on whole-genome sequencing

scientific article published on September 2013

Effects of control interventions on Clostridium difficile infection in England: an observational study ⬇️

scientific article published on 24 January 2017

Evolution of an agriculture-associated disease causing Campylobacter coli clade: evidence from national surveillance data in Scotland

scientific article (publication date: 15 December 2010)

Evolutionary History of the Global Emergence of the Escherichia coli Epidemic Clone ST131

scientific article published on 22 March 2016

Evolutionary Trade-Offs Underlie the Multi-faceted Virulence of Staphylococcus aureus

scientific article published on 2 September 2015

Evolutionary dynamics of Enterococcus faecium reveals complex genomic relationships between isolates with independent emergence of vancomycin resistance

scientific article published on January 2016

Genome-wide association studies reveal the role of polymorphisms affecting factor H binding protein expression in host invasion by Neisseria meningitidis

scientific article published on 18 October 2021

GenomegaMap: within-species genome-wide dN/dS estimation from over 10,000 genomes

GenomegaMap: within-species genome-wide dN/dS estimation from over 10,000 genomes

scientific article published on 13 March 2020

Global Genomic Epidemiology of Salmonella enterica Serovar Typhimurium DT104.

scientific article

Microevolutionary analysis of Clostridium difficile genomes to investigate transmission

scientific article

Mismatch induced speciation in Salmonella: model and data

scientific article

Natural mutations in a Staphylococcus aureus virulence regulator attenuate cytotoxicity but permit bacteremia and abscess formation

scientific article (publication date: 16 May 2016)

Nested Russian Doll-Like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance Gene blaKPC

scientific article published on 11 April 2016

New Routes to Phylogeography: A Bayesian Structured Coalescent Approximation

scientific article published on 12 August 2015

Niche-specific genome degradation and convergent evolution shaping Staphylococcus aureus adaptation during severe infections

scientific article published on 14 June 2022

Panton-Valentine leucocidin is the key determinant of pyomyositis in a bacterial GWAS

scientific article published on 22 February 2019

Panton-Valentine leukocidin is the key determinant of Staphylococcus aureus pyomyositis in a bacterial genome-wide association study

Population genetic estimation of the loss of genetic diversity during horizontal transmission of HIV-1.

scientific article published on 23 March 2006

Predicting the virulence of MRSA from its genome sequence

scientific article

Promiscuous bacteria have staying power.

scientific article published on 8 September 2017

Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis

scientific article

Rapid host switching in generalist Campylobacter strains erodes the signal for tracing human infections

scientific article

Reply to Goeman et al.: Trade-offs in model averaging using multilevel tests

scientific article published on 29 October 2019

Reply to Held: When is a harmonic meanp-value a Bayes factor?

scientific article published on 19 March 2019

Severe infections emerge from commensal bacteria by adaptive evolution

scientific article published on 19 December 2017

Severe infections emerge from the microbiome by adaptive evolution

Targeted control of pneumolysin production by a mobile genetic element in Streptococcus pneumoniae

scientific article published in 2022

The distribution of bacterial doubling times in the wild.

scientific article published in June 2018

The harmonic mean -value for combining dependent tests

article published in the Proceedings of the National Academy of Sciences of the United States of America

Whole genome sequencing and de novo assembly identifies Sydney-like variant noroviruses and recombinants during the winter 2012/2013 outbreak in England ⬇️

scientific article

Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study

scientific article published on 23 June 2015

Whole-genome sequencing shows that patient-to-patient transmission rarely accounts for acquisition of Staphylococcus aureus in an intensive care unit

scientific article published on 12 December 2013

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