List of works - Mami Yamazaki

A polyhedral approach for understanding flavonoid biosynthesis in Arabidopsis

scientific article published on 21 March 2010

A survival strategy: the coevolution of the camptothecin biosynthetic pathway and self-resistance mechanism

scientific article published on 24 August 2009

An MYB transcription factor regulating specialized metabolisms in Ophiorrhiza pumila

article published in 2016

An acyltransferase-like gene obtained by differential gene expression profiles of quinolizidine alkaloid-producing and nonproducing cultivars of Lupinus angustifolius

article

An improved tolerance to cadmium by overexpression of two genes for cysteine synthesis in tobacco

article

Biosynthesis of camptothecin. In silico and in vivo tracer study from [1-13C]glucose

scientific article

Biosynthetic system of camptothecin: An anticancer plant product

article

Camptothecin

article published in 2013

Cell-specific localization of alkaloids in Catharanthus roseus stem tissue measured with Imaging MS and Single-cell MS.

scientific article published on 21 March 2016

Comparative Characterization of the Leaf Tissue of Physalis alkekengi and Physalis peruviana Using RNA-seq and Metabolite Profiling

scientific article (publication date: 2016)

Comparative transcriptome analyses of three medicinal Forsythia species and prediction of candidate genes involved in secondary metabolisms

article

Computational Studies on Biosynthetic Carbocation Rearrangements Leading to Quiannulatene: Initial Conformation Regulates Biosynthetic Route, Stereochemistry, and Skeleton Type

scientific article published on 11 October 2018

Computational study on a puzzle in the biosynthetic pathway of anthocyanin: Why is an enzymatic oxidation/ reduction process required for a simple tautomerization?

scientific article published on 13 June 2018

Convergent evolution in the BAHD family of acyl transferases: identification and characterization of anthocyanin acyl transferases from Arabidopsis thaliana

scientific article published on 8 April 2007

Correlation of camptothecin-producing ability and phylogenetic relationship in the genus Ophiorrhiza

scientific article published on 23 November 2010

Coupling deep transcriptome analysis with untargeted metabolic profiling in Ophiorrhiza pumila to further the understanding of the biosynthesis of the anti-cancer alkaloid camptothecin and anthraquinones

scientific article

De Novo Deep Transcriptome Analysis of Medicinal Plants for Gene Discovery in Biosynthesis of Plant Natural Products

scientific article

De Novo RNA Sequencing and Expression Analysis of Aconitum carmichaelii to Analyze Key Genes Involved in the Biosynthesis of Diterpene Alkaloids

scientific article

De novo transcriptome assembly and characterization of nine tissues of Lonicera japonica to identify potential candidate genes involved in chlorogenic acid, luteolosides, and secoiridoid biosynthesis pathways

scientific article published on 14 September 2016

Differential gene expression profiles of red and green forms of Perilla frutescens leading to comprehensive identification of anthocyanin biosynthetic genes

scientific article published on 29 May 2008

Enhanced radical scavenging activity of genetically modified Arabidopsis seeds

scientific article published in March 2005

Enhancement of oxidative and drought tolerance in Arabidopsis by overaccumulation of antioxidant flavonoids

scientific article

Focused Genome Mining of Structurally Related Sesterterpenes: Enzymatic Formation of Enantiomeric and Diastereomeric Products

scientific article published on 29 November 2017

Function of AP2/ERF Transcription Factors Involved in the Regulation of Specialized Metabolism in Ophiorrhiza pumila Revealed by Transcriptomics and Metabolomics

scientific article published on 09 December 2016

Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor

scientific article

Gene-Metabolite Network Analysis Revealed Tissue-Specific Accumulation of Therapeutic Metabolites in Mallotus japonicus

scientific article published in 2021

GliA in Aspergillus fumigatus is required for its tolerance to gliotoxin and affects the amount of extracellular and intracellular gliotoxin ⬇️

scientific article

High-Throughput Sequencing and De Novo Assembly of Red and Green Forms of the Perilla frutescens var. crispa Transcriptome

scientific article

High-throughput sequencing and de novo transcriptome assembly of Swertia japonica to identify genes involved in the biosynthesis of therapeutic metabolites

scientific article published on 04 July 2016

Identification of Serratane Synthase Gene from the Fern Lycopodium clavatum.

scientific article published on 19 January 2017

Informatics framework of traditional Sino-Japanese medicine (Kampo) unveiled by factor analysis

scientific article

Integrated omics analysis of specialized metabolism in medicinal plants

scientific article published on 21 January 2017

KNApSAcK Family Databases: Integrated Metabolite-Plant Species Databases for Multifaceted Plant Research

scholarly article

Lysine decarboxylase catalyzes the first step of quinolizidine alkaloid biosynthesis and coevolved with alkaloid production in leguminosae

scientific article

Lysine-derived Alkaloids: Overview and Update on Biosynthesis and Medicinal Applications with Emphasis on Quinolizidine Alkaloids.

scientific article published on 6 May 2016

Mechanistic Study on the Oxidation of Anthocyanidin Synthase by Quantum Mechanical Calculation

scientific article published on 15 May 2006

Mechanistic studies on three 2-oxoglutarate-dependent oxygenases of flavonoid biosynthesis: anthocyanidin synthase, flavonol synthase, and flavanone 3beta-hydroxylase

scientific article (publication date: 9 January 2004)

Metabolic profiling and cytological analysis of proanthocyanidins in immature seeds of Arabidopsis thaliana flavonoid accumulation mutants

scientific article published on 18 February 2010

Metabolomics-oriented isolation and structure elucidation of 37 compounds including two anthocyanins from Arabidopsis thaliana

scientific article published in May 2009

Molecular Evolution and Functional Characterization of a Bifunctional Decarboxylase Involved in Lycopodium Alkaloid Biosynthesis

scientific article published on 14 June 2016

Molecular characterization of a novel quinolizidine alkaloid O-tigloyltransferase: cDNA cloning, catalytic activity of recombinant protein and expression analysis in Lupinus plants

scientific article published on 19 January 2005

Mutations in topoisomerase I as a self-resistance mechanism coevolved with the production of the anticancer alkaloid camptothecin in plants

scholarly article

Onocerin Biosynthesis Requires Two Highly Dedicated Triterpene Cyclases in a Fern Lycopodium clavatum.

scientific article

Perspective: functional genomics towards new biotechnology in medicinal plants

article

Quinolizidine alkaloid biosynthesis: recent advances and future prospects

scientific article published on 26 October 2012

RNA-seq Transcriptome Analysis of Panax japonicus, and Its Comparison with Other Panax Species to Identify Potential Genes Involved in the Saponins Biosynthesis

scientific article published on 12 April 2016

Recent advances in the biosynthesis and accumulation of anthocyanins

scientific article

Regulatory mechanisms for anthocyanin biosynthesis in chemotypes of Perilla frutescens var. crispa

Revisiting anabasine biosynthesis in tobacco hairy roots expressing plant lysine decarboxylase gene by using 15 N-labeled lysine

Structural insight of DNA topoisomerases I from camptothecin-producing plants revealed by molecular dynamics simulations

scientific article

Suppression of camptothecin biosynthetic genes results in metabolic modification of secondary products in hairy roots of Ophiorrhiza pumila

article

The Energetic Viability of Δ¹-Piperideine Dimerization in Lysine-derived Alkaloid Biosynthesis

scholarly article by Hajime Sato published in August 2018

The flavonoid biosynthetic pathway in Arabidopsis: structural and genetic diversity

scientific article published on 16 February 2013

Theoretical Study of Sesterfisherol Biosynthesis: Computational Prediction of Key Amino Acid Residue in Terpene Synthase

scientific article

Transcriptomic landscape of Pueraria lobata demonstrates potential for phytochemical study

scientific article published on 22 June 2015

Transport of camptothecin in hairy roots of Ophiorrhiza pumila

scientific article published on 29 October 2007

Two glycosyltransferases involved in anthocyanin modification delineated by transcriptome independent component analysis in Arabidopsis thaliana

scientific article

List of works by Mami Yamazaki

A polyhedral approach for understanding flavonoid biosynthesis in Arabidopsis

A survival strategy: the coevolution of the camptothecin biosynthetic pathway and self-resistance mechanism

An MYB transcription factor regulating specialized metabolisms in Ophiorrhiza pumila

An acyltransferase-like gene obtained by differential gene expression profiles of quinolizidine alkaloid-producing and nonproducing cultivars of Lupinus angustifolius

An improved tolerance to cadmium by overexpression of two genes for cysteine synthesis in tobacco

Biosynthesis of camptothecin. In silico and in vivo tracer study from [1-13C]glucose

Biosynthetic system of camptothecin: An anticancer plant product

Camptothecin

Cell-specific localization of alkaloids in Catharanthus roseus stem tissue measured with Imaging MS and Single-cell MS.

Comparative Characterization of the Leaf Tissue of Physalis alkekengi and Physalis peruviana Using RNA-seq and Metabolite Profiling

Comparative transcriptome analyses of three medicinal Forsythia species and prediction of candidate genes involved in secondary metabolisms

Computational Studies on Biosynthetic Carbocation Rearrangements Leading to Quiannulatene: Initial Conformation Regulates Biosynthetic Route, Stereochemistry, and Skeleton Type

Computational study on a puzzle in the biosynthetic pathway of anthocyanin: Why is an enzymatic oxidation/ reduction process required for a simple tautomerization?

Convergent evolution in the BAHD family of acyl transferases: identification and characterization of anthocyanin acyl transferases from Arabidopsis thaliana

Correlation of camptothecin-producing ability and phylogenetic relationship in the genus Ophiorrhiza

Coupling deep transcriptome analysis with untargeted metabolic profiling in Ophiorrhiza pumila to further the understanding of the biosynthesis of the anti-cancer alkaloid camptothecin and anthraquinones

De Novo Deep Transcriptome Analysis of Medicinal Plants for Gene Discovery in Biosynthesis of Plant Natural Products

De Novo RNA Sequencing and Expression Analysis of Aconitum carmichaelii to Analyze Key Genes Involved in the Biosynthesis of Diterpene Alkaloids

De novo transcriptome assembly and characterization of nine tissues of Lonicera japonica to identify potential candidate genes involved in chlorogenic acid, luteolosides, and secoiridoid biosynthesis pathways

Differential gene expression profiles of red and green forms of Perilla frutescens leading to comprehensive identification of anthocyanin biosynthetic genes

Enhanced radical scavenging activity of genetically modified Arabidopsis seeds

Enhancement of oxidative and drought tolerance in Arabidopsis by overaccumulation of antioxidant flavonoids

Focused Genome Mining of Structurally Related Sesterterpenes: Enzymatic Formation of Enantiomeric and Diastereomeric Products

Function of AP2/ERF Transcription Factors Involved in the Regulation of Specialized Metabolism in Ophiorrhiza pumila Revealed by Transcriptomics and Metabolomics

Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor

Gene-Metabolite Network Analysis Revealed Tissue-Specific Accumulation of Therapeutic Metabolites in Mallotus japonicus

GliA in Aspergillus fumigatus is required for its tolerance to gliotoxin and affects the amount of extracellular and intracellular gliotoxin ⬇️

High-Throughput Sequencing and De Novo Assembly of Red and Green Forms of the Perilla frutescens var. crispa Transcriptome

High-throughput sequencing and de novo transcriptome assembly of Swertia japonica to identify genes involved in the biosynthesis of therapeutic metabolites

Identification of Serratane Synthase Gene from the Fern Lycopodium clavatum.

Informatics framework of traditional Sino-Japanese medicine (Kampo) unveiled by factor analysis

Integrated omics analysis of specialized metabolism in medicinal plants

KNApSAcK Family Databases: Integrated Metabolite-Plant Species Databases for Multifaceted Plant Research

Lysine decarboxylase catalyzes the first step of quinolizidine alkaloid biosynthesis and coevolved with alkaloid production in leguminosae

Lysine-derived Alkaloids: Overview and Update on Biosynthesis and Medicinal Applications with Emphasis on Quinolizidine Alkaloids.

Mechanistic Study on the Oxidation of Anthocyanidin Synthase by Quantum Mechanical Calculation

Mechanistic studies on three 2-oxoglutarate-dependent oxygenases of flavonoid biosynthesis: anthocyanidin synthase, flavonol synthase, and flavanone 3beta-hydroxylase

Metabolic profiling and cytological analysis of proanthocyanidins in immature seeds of Arabidopsis thaliana flavonoid accumulation mutants

Metabolomics-oriented isolation and structure elucidation of 37 compounds including two anthocyanins from Arabidopsis thaliana

Molecular Evolution and Functional Characterization of a Bifunctional Decarboxylase Involved in Lycopodium Alkaloid Biosynthesis

Molecular characterization of a novel quinolizidine alkaloid O-tigloyltransferase: cDNA cloning, catalytic activity of recombinant protein and expression analysis in Lupinus plants

Mutations in topoisomerase I as a self-resistance mechanism coevolved with the production of the anticancer alkaloid camptothecin in plants

Onocerin Biosynthesis Requires Two Highly Dedicated Triterpene Cyclases in a Fern Lycopodium clavatum.

Perspective: functional genomics towards new biotechnology in medicinal plants

Quinolizidine alkaloid biosynthesis: recent advances and future prospects

RNA-seq Transcriptome Analysis of Panax japonicus, and Its Comparison with Other Panax Species to Identify Potential Genes Involved in the Saponins Biosynthesis

Recent advances in the biosynthesis and accumulation of anthocyanins

Regulatory mechanisms for anthocyanin biosynthesis in chemotypes of Perilla frutescens var. crispa

Revisiting anabasine biosynthesis in tobacco hairy roots expressing plant lysine decarboxylase gene by using 15 N-labeled lysine

Structural insight of DNA topoisomerases I from camptothecin-producing plants revealed by molecular dynamics simulations

Suppression of camptothecin biosynthetic genes results in metabolic modification of secondary products in hairy roots of Ophiorrhiza pumila

The Energetic Viability of Δ¹-Piperideine Dimerization in Lysine-derived Alkaloid Biosynthesis

The flavonoid biosynthetic pathway in Arabidopsis: structural and genetic diversity

Theoretical Study of Sesterfisherol Biosynthesis: Computational Prediction of Key Amino Acid Residue in Terpene Synthase

Transcriptomic landscape of Pueraria lobata demonstrates potential for phytochemical study

Transport of camptothecin in hairy roots of Ophiorrhiza pumila

Two glycosyltransferases involved in anthocyanin modification delineated by transcriptome independent component analysis in Arabidopsis thaliana