List of works - Francesco Beghini

Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle

scientific article published on 17 January 2019

Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome

article

Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

scientific article published on 01 April 2019

Accessible, curated metagenomic data through ExperimentHub.

scientific article

Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis

scientific article

Large-scale comparative metagenomics of Blastocystis, a common member of the human gut microbiome

scientific article published on 22 August 2017

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0.

scientific article published on 19 May 2020

Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

scientific article published on 28 December 2019

Tobacco exposure associated with oral microbiota oxygen utilization in the New York City Health and Nutrition Examination Study

scientific article published on 28 March 2019

Sociodemographic variation in the oral microbiome

scientific article published on 08 May 2019

Author Correction: Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

scientific article published on 01 December 2019

Gut microbiome strain-sharing within isolated village social networks

How inoculation affects the development and the performances of microalgal-bacterial consortia treating real municipal wastewater

scientific article published on 13 March 2020

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

Critical Assessment of Metagenome Interpretation - the second round of challenges

Sociodemographic variation in the oral microbiome

Detailed Social Network Interactions and Gut Microbiome Strain-Sharing Within Isolated Honduras Villages

Metagenomic polymorphic toxin effector and immunity profiling predicts microbiome development and disease-related dysbiosis

Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals

Environmental, Socioeconomic, and Health Factors Associated with Gut Microbiome Species and Strains in Isolated Honduras Villages

Critical Assessment of Metagenome Interpretation: the second round of challenges

scientific article published in April 2022

List of works by Francesco Beghini

Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle

Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome

Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

Accessible, curated metagenomic data through ExperimentHub.

Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis

Large-scale comparative metagenomics of Blastocystis, a common member of the human gut microbiome

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0.

Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

Tobacco exposure associated with oral microbiota oxygen utilization in the New York City Health and Nutrition Examination Study

Sociodemographic variation in the oral microbiome

Author Correction: Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

Gut microbiome strain-sharing within isolated village social networks

How inoculation affects the development and the performances of microalgal-bacterial consortia treating real municipal wastewater

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

Critical Assessment of Metagenome Interpretation - the second round of challenges

Sociodemographic variation in the oral microbiome

Detailed Social Network Interactions and Gut Microbiome Strain-Sharing Within Isolated Honduras Villages

Metagenomic polymorphic toxin effector and immunity profiling predicts microbiome development and disease-related dysbiosis

Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals

Environmental, Socioeconomic, and Health Factors Associated with Gut Microbiome Species and Strains in Isolated Honduras Villages

Critical Assessment of Metagenome Interpretation: the second round of challenges