List of works - Geir Kjetil Sandve

A map of direct TF-DNA interactions in the human genome

article by Marius Gheorghe et al published 28 February 2019 in Nucleic Acids Research

A map of direct TF-DNA interactions in the human genome

A survey of motif discovery methods in an integrated framework

scientific article

Age-associated hyper-methylated regions in the human brain overlap with bivalent chromatin domains

scientific article

Assessment of composite motif discovery methods

scientific article

Author Correction: Human somatic cell mutagenesis creates genetically tractable sarcomas

scientific article published on 01 April 2020

B cell tolerance and antibody production to the celiac disease autoantigen transglutaminase 2

scientific article published on 01 February 2020

Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines

scientific article

ClusTrack: feature extraction and similarity measures for clustering of genome-wide data sets

scientific article

Coloc-stats: a unified web interface to perform colocalization analysis of genomic features

scientific article published in July 2018

Colocalization analyses of genomic elements: approaches, recommendations and challenges

scientific article published on 01 May 2019

Complex patterns of concomitant medication use: A study among Norwegian women using paracetamol during pregnancy

scientific article published on 28 December 2017

Compo: composite motif discovery using discrete models

scientific article published on 08 December 2008

Coordinates and Intervals in Graph-based Reference Genomes

Coordinates and intervals in graph-based reference genomes

scientific article

DeepRC: Immune repertoire classification with attention-based deep massive multiple instance learning

scientific article published on 13 April 2020

Disease-driving CD4+ T cell clonotypes persist for decades in celiac disease

scientific article published on 14 May 2018

EBNA2 binds to genomic intervals associated with multiple sclerosis and overlaps with vitamin D receptor occupancy.

scientific article published on 8 April 2015

Exploiting antigen receptor information to quantify index switching in single-cell transcriptome sequencing experiments

scientific article published in PLoS ONE

GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome

scientific article published on 27 April 2017

GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome

Galaxy Portal: interacting with the galaxy platform through mobile devices

scientific article published on 27 January 2016

Genome Build Information Is An Essential Part Of Genomic Track Files

Genome build information is an essential part of genomic track files.

scientific article published on 14 September 2017

Genomic regions associated with multiple sclerosis are active in B cells

scientific article (publication date: 2012)

Graph Peak Caller: calling ChIP-Seq Peaks on Graph-based Reference Genomes

Handling realistic assumptions in hypothesis testing of 3D co-localization of genomic elements

scientific article

HiBrowse: multi-purpose statistical analysis of genome-wide chromatin 3D organization

scientific article

High-Throughput Single-Cell Analysis of B Cell Receptor Usage among Autoantigen-Specific Plasma Cells in Celiac Disease.

scientific article published on 9 June 2017

Human somatic cell mutagenesis creates genetically tractable sarcomas

scientific article published on 17 August 2014

Identifying elemental genomic track types and representing them uniformly

scientific article

Improved benchmarks for computational motif discovery

scientific article published on 8 June 2007

In the loop: promoter-enhancer interactions and bioinformatics

scientific article

Increased expression of IRF4 and ETS1 in CD4+ cells from patients with intermittent allergic rhinitis

scientific article published on 15 September 2011

Integrating multiple oestrogen receptor alpha ChIP studies: overlap with disease susceptibility regions, DNase I hypersensitivity peaks and gene expression

scientific article

Mind the gaps: overlooking inaccessible regions confounds statistical testing in genome analysis

scientific article published on 14 December 2018

NucBreak: Location of structural errors in a genome assembly by using paired-end Illumina reads

NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences.

scientific article published on 12 July 2017

Segmentation of DNA sequences into twostate regions and melting fork regions

scientific article published on 17 December 2008

Sequential Monte Carlo multiple testing

scientific article published on 13 October 2011

Ten simple rules for reproducible computational research

scientific article

The Genomic HyperBrowser: an analysis web server for genome-scale data

scientific article

The Genomic HyperBrowser: inferential genomics at the sequence level

scientific article

The differential disease regulome

scientific article

The rainfall plot: its motivation, characteristics and pitfalls

scientific article

Transcriptionally active regions are the preferred targets for chromosomal HPV integration in cervical carcinogenesis

scientific article

Uracil Accumulation and Mutagenesis Dominated by Cytosine Deamination in CpG Dinucleotides in Mice Lacking UNG and SMUG1.

scientific article

Vitamin D receptor ChIP-seq in primary CD4+ cells: relationship to serum 25-hydroxyvitamin D levels and autoimmune disease

scientific article

Vitamin D receptor binding, chromatin states and association with multiple sclerosis.

scientific article

c-Myb Binding Sites in Haematopoietic Chromatin Landscapes

scientific article published on 24 July 2015

List of works by Geir Kjetil Sandve

A map of direct TF-DNA interactions in the human genome

A map of direct TF-DNA interactions in the human genome

A survey of motif discovery methods in an integrated framework

Age-associated hyper-methylated regions in the human brain overlap with bivalent chromatin domains

Assessment of composite motif discovery methods

Author Correction: Human somatic cell mutagenesis creates genetically tractable sarcomas

B cell tolerance and antibody production to the celiac disease autoantigen transglutaminase 2

Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines

ClusTrack: feature extraction and similarity measures for clustering of genome-wide data sets

Coloc-stats: a unified web interface to perform colocalization analysis of genomic features

Colocalization analyses of genomic elements: approaches, recommendations and challenges

Complex patterns of concomitant medication use: A study among Norwegian women using paracetamol during pregnancy

Compo: composite motif discovery using discrete models

Coordinates and Intervals in Graph-based Reference Genomes

Coordinates and intervals in graph-based reference genomes

DeepRC: Immune repertoire classification with attention-based deep massive multiple instance learning

Disease-driving CD4+ T cell clonotypes persist for decades in celiac disease

EBNA2 binds to genomic intervals associated with multiple sclerosis and overlaps with vitamin D receptor occupancy.

Exploiting antigen receptor information to quantify index switching in single-cell transcriptome sequencing experiments

GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome

GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome

Galaxy Portal: interacting with the galaxy platform through mobile devices

Genome Build Information Is An Essential Part Of Genomic Track Files

Genome build information is an essential part of genomic track files.

Genomic regions associated with multiple sclerosis are active in B cells

Graph Peak Caller: calling ChIP-Seq Peaks on Graph-based Reference Genomes

Handling realistic assumptions in hypothesis testing of 3D co-localization of genomic elements

HiBrowse: multi-purpose statistical analysis of genome-wide chromatin 3D organization

High-Throughput Single-Cell Analysis of B Cell Receptor Usage among Autoantigen-Specific Plasma Cells in Celiac Disease.

Human somatic cell mutagenesis creates genetically tractable sarcomas

Identifying elemental genomic track types and representing them uniformly

Improved benchmarks for computational motif discovery

In the loop: promoter-enhancer interactions and bioinformatics

Increased expression of IRF4 and ETS1 in CD4+ cells from patients with intermittent allergic rhinitis

Integrating multiple oestrogen receptor alpha ChIP studies: overlap with disease susceptibility regions, DNase I hypersensitivity peaks and gene expression

Mind the gaps: overlooking inaccessible regions confounds statistical testing in genome analysis

NucBreak: Location of structural errors in a genome assembly by using paired-end Illumina reads

NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences.

Segmentation of DNA sequences into twostate regions and melting fork regions

Sequential Monte Carlo multiple testing

Ten simple rules for reproducible computational research

The Genomic HyperBrowser: an analysis web server for genome-scale data

The Genomic HyperBrowser: inferential genomics at the sequence level

The differential disease regulome

The rainfall plot: its motivation, characteristics and pitfalls

Transcriptionally active regions are the preferred targets for chromosomal HPV integration in cervical carcinogenesis

Uracil Accumulation and Mutagenesis Dominated by Cytosine Deamination in CpG Dinucleotides in Mice Lacking UNG and SMUG1.

Vitamin D receptor ChIP-seq in primary CD4+ cells: relationship to serum 25-hydroxyvitamin D levels and autoimmune disease

Vitamin D receptor binding, chromatin states and association with multiple sclerosis.

c-Myb Binding Sites in Haematopoietic Chromatin Landscapes