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List of works by Hong-Yu Ou

A novel strategy for the identification of genomic islands by comparative analysis of the contents and contexts of tRNA sites in closely related bacteria

scientific article

Acinetobacter insertion sequence ISAba11 belongs to a novel family that encodes transposases with a signature HHEK motif

scientific article

Analysis of a genomic island housing genes for DNA S-modification system in Streptomyces lividans 66 and its counterparts in other distantly related bacteria

scientific article published on 19 July 2007

Analysis of nucleotide distribution in the genome of Streptomyces coelicolor A3(2) using the Z curve method.

scientific article

Characterization of a novel chaperone/usher fimbrial operon present on KpGI-5, a methionine tRNA gene-associated genomic island in Klebsiella pneumoniae

scientific article

Cleavage of Phosphorothioated DNA and Methylated DNA by the Type IV Restriction Endonuclease ScoMcrA ⬇️

scientific article published on December 23, 2010

Comparative Analysis of CRISPR Loci Found in Streptomyces Genome Sequences

scientific article published on 20 July 2018

Complete genome sequence of Klebsiella pneumoniae subsp. pneumoniae HS11286, a multidrug-resistant strain isolated from human sputum.

scientific article published in April 2012

Coronavirus phylogeny based on a geometric approach

scientific article

Deletion of TnAbaR23 results in both expected and unexpected antibiogram changes in a multidrug-resistant Acinetobacter baumannii strain

scientific article (publication date: April 2012)

Emergence of the third-generation cephalosporin-resistant hypervirulent Klebsiella pneumoniae due to the acquisition of a self-transferable blaDHA-1-carrying plasmid by an ST23 strain.

scientific article

Expansion of the known Klebsiella pneumoniae species gene pool by characterization of novel alien DNA islands integrated into tmRNA gene sites.

scientific article published on 21 December 2010

GS-Finder: a program to find bacterial gene start sites with a self-training method.

scientific article published in March 2004

Genome sequence of the thermophilic strain Bacillus coagulans 2-6, an efficient producer of high-optical-purity L-lactic acid

scientific article

Genomic analysis and temperature-dependent transcriptome profiles of the rhizosphere originating strain Pseudomonas aeruginosa M18.

scientific article

ICEberg 2.0: an updated database of bacterial integrative and conjugative elements

scientific article published on 01 January 2019

ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria

scientific article

Identification and characterization of acetyltransferase-type toxin-antitoxin locus in Klebsiella pneumoniae

scientific article published on 20 February 2018

Identification of Horizontally-transferred Genomic Islands and Genome Segmentation Points by Using the GC Profile Method

scientific article

Insights into fluorometabolite biosynthesis in Streptomyces cattleya DSM46488 through genome sequence and knockout mutants.

scientific article

PSP: rapid identification of orthologous coding genes under positive selection across multiple closely related prokaryotic genomes

scientific article

Pathogenicity islands PAPI-1 and PAPI-2 contribute individually and synergistically to the virulence of Pseudomonas aeruginosa strain PA14

scientific article

Prediction of proteinase cleavage sites in polyproteins of coronaviruses and its applications in analyzing SARS-CoV genomes.

scientific article published in October 2003

Recognition of translation initiation sites of eukaryotic genes based on an EM algorithm.

scientific article published in January 2003

SecReT4: a web-based bacterial type IV secretion system resource

scientific article

TADB 2.0: an updated database of bacterial type II toxin-antitoxin loci

scientific article published on 2 November 2017

The Z curve database: a graphic representation of genome sequences

scientific article (publication date: 22 March 2003)

ThioFinder: a web-based tool for the identification of thiopeptide gene clusters in DNA sequences

scientific article

Transmission of Nonconjugative Virulence or Resistance Plasmids Mediated by a Self-Transferable IncN3 Plasmid from Carbapenem-Resistant Klebsiella pneumoniae

scientific article published in 2022

Whole-Genome-Sequencing characterization of bloodstream infection-causing hypervirulent Klebsiella pneumoniae of capsular serotype K2 and ST374.

scientific article published on 17 January 2018

ZCURVE: a new system for recognizing protein-coding genes in bacterial and archaeal genomes

scientific article

ZCURVE_CoV: a new system to recognize protein coding genes in coronavirus genomes, and its applications in analyzing SARS-CoV genomes.

scientific article published in July 2003

dndDB: a database focused on phosphorothioation of the DNA backbone

scientific article

mGenomeSubtractor: a web-based tool for parallel in silico subtractive hybridization analysis of multiple bacterial genomes.

scientific article

oriTfinder: a web-based tool for the identification of origin of transfers in DNA sequences of bacterial mobile genetic elements.

scientific article published on 4 May 2018

sRNAscanner: a computational tool for intergenic small RNA detection in bacterial genomes

scientific article

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