List of works - Iman Hajirasouliha

A combinatorial approach for analyzing intra-tumor heterogeneity from high-throughput sequencing data

scientific article

A robust benchmark for detection of germline large deletions and insertions

scientific article published on 15 June 2020

Alu repeat discovery and characterization within human genomes

scientific article

Author Correction: A robust benchmark for detection of germline large deletions and insertions

scientific article published on 22 July 2020

Biomolecular network motif counting and discovery by color coding

scientific article

Characterization of segmental duplications and large inversions using Linked-Reads

Characterization of structural variants with single molecule and hybrid sequencing approaches

scientific article

Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data ⬇️

scientific article published on April 9, 2011

Deep Convolutional Neural Networks Enable Discrimination of Heterogeneous Digital Pathology Images

scientific article published on 28 December 2017

Detecting independent and recurrent copy number aberrations using interval graphs

scientific article

Detection and characterization of novel sequence insertions using paired-end next-generation sequencing

scientific article

Fast and scalable inference of multi-sample cancer lineages

scientific article published on 6 May 2015

From sequence to molecular pathology, and a mechanism driving the neuroendocrine phenotype in prostate cancer

scientific article published on July 2012

Integrated genome and transcriptome sequencing identifies a novel form of hybrid and aggressive prostate cancer

scientific article published on 21 March 2012

MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels

scientific article

Mapping copy number variation by population-scale genome sequencing

scientific article

Meltos: multi-sample tumor phylogeny reconstruction for structural variants

scientific article published on 01 February 2020

Mirroring co-evolving trees in the light of their topologies

scientific article published on 6 March 2012

Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery

scientific article

Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies

scientific article published on July 2008

Simultaneous structural variation discovery among multiple paired-end sequenced genomes

scientific article published on 2 November 2011

smyRNA: a novel Ab initio ncRNA gene finder

scientific article

List of works by Iman Hajirasouliha

A combinatorial approach for analyzing intra-tumor heterogeneity from high-throughput sequencing data

A robust benchmark for detection of germline large deletions and insertions

Alu repeat discovery and characterization within human genomes

Author Correction: A robust benchmark for detection of germline large deletions and insertions

Biomolecular network motif counting and discovery by color coding

Characterization of segmental duplications and large inversions using Linked-Reads

Characterization of structural variants with single molecule and hybrid sequencing approaches

Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data ⬇️

Deep Convolutional Neural Networks Enable Discrimination of Heterogeneous Digital Pathology Images

Detecting independent and recurrent copy number aberrations using interval graphs

Detection and characterization of novel sequence insertions using paired-end next-generation sequencing

Fast and scalable inference of multi-sample cancer lineages

From sequence to molecular pathology, and a mechanism driving the neuroendocrine phenotype in prostate cancer

Integrated genome and transcriptome sequencing identifies a novel form of hybrid and aggressive prostate cancer

MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels

Mapping copy number variation by population-scale genome sequencing

Meltos: multi-sample tumor phylogeny reconstruction for structural variants

Mirroring co-evolving trees in the light of their topologies

Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery

Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies

Simultaneous structural variation discovery among multiple paired-end sequenced genomes

smyRNA: a novel Ab initio ncRNA gene finder