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List of works by Thilo Muth

A Potential Golden Age to Come-Current Tools, Recent Use Cases, and Future Avenues for De Novo Sequencing in Proteomics

scientific article published on 22 August 2018

A Robust and Universal Metaproteomics Workflow for Research Studies and Routine Diagnostics Within 24 h Using Phenol Extraction, FASP Digest, and the MetaProteomeAnalyzer

scientific article published on 16 August 2019

An environment for sustainable research software in Germany and beyond: current state, open challenges, and call for action

scientific article published on 26 January 2021

An iterative and automated computational pipeline for untargeted strain-level identification using MS/MS spectra from pathogenic samples

scientific article published on 25 October 2019

Challenges and promise at the interface of metaproteomics and genomics: an overview of recent progress in metaproteogenomic data analysis

scientific article published on 30 April 2019

Colonic metaproteomic signatures of active bacteria and the host in obesity.

scientific article published on 10 August 2015

Comparative performance of four methods for high-throughput glycosylation analysis of immunoglobulin G in genetic and epidemiological research

scientific article

Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows

scientific article published on 15 December 2021

DeNovoGUI: an open source graphical user interface for de novo sequencing of tandem mass spectra.

scientific article published on 7 January 2014

Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework

scientific article published on 31 January 2018

Editorial for Special Issue: Metaproteomics

scientific article published on 05 March 2019

Evaluating de novo sequencing in proteomics: already an accurate alternative to database-driven peptide identification?

scientific article

JDet: interactive calculation and visualization of function-related conservation patterns in multiple sequence alignments and structures

scientific article

MPA Portable: A Stand-Alone Software Package for Analyzing Metaproteome Samples on the Go.

scientific article published on 7 December 2017

Navigating through metaproteomics data: a logbook of database searching

scientific article published on 16 March 2015

Peptide-to-Protein Summarization: An Important Step for Accurate Quantification in Label-Based Proteomics

scientific article published on 01 January 2019

Perspective on Proteomics for Virus Detection in Clinical Samples

scientific article published on 22 October 2020

ProteoCloud: a full-featured open source proteomics cloud computing pipeline.

scientific article published on 8 January 2013

Purple: A Computational Workflow for Strategic Selection of Peptides for Viral Diagnostics Using MS-Based Targeted Proteomics

scientific article published on 08 June 2019

Sample prefractionation with liquid isoelectric focusing enables in depth microbial metaproteome analysis of mesophilic and thermophilic biogas plants

scientific article

Survey of metaproteomics software tools for functional microbiome analysis

scientific article published on 10 November 2020

Tandem Mass Spectrum Sequencing: An Alternative to Database Search Engines in Shotgun Proteomics

scientific article published on January 2016

The MetaProteomeAnalyzer: a powerful open-source software suite for metaproteomics data analysis and interpretation.

scientific article

The impact of sequence database choice on metaproteomic results in gut microbiota studies

scientific article published on 27 September 2016

The importance of graph databases and graph learning for clinical applications

scientific article published on 10 July 2023

Viewing the proteome: how to visualize proteomics data?

scientific article

gNOMO: a multi-omics pipeline for integrated host and microbiome analysis of non-model organisms

scientific article published on 05 August 2020

glyXalign: high-throughput migration time alignment preprocessing of electrophoretic data retrieved via multiplexed capillary gel electrophoresis with laser-induced fluorescence detection-based glycoprofiling.

scientific article

jTraqX: a free, platform independent tool for isobaric tag quantitation at the protein level.

scientific article published in March 2010

ms_lims, a simple yet powerful open source laboratory information management system for MS-driven proteomics.

scientific article

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