List of works by Ben J. Woodcroft

AMPK beta subunits display isoform specific affinities for carbohydrates

scientific article

An evolving view of methane metabolism in the Archaea

scientific article published on 21 January 2019

An integrative bioinformatic predictor of protein sub-cellular localisation in malaria

scientific article published on 21 November 2011

Archaeal and bacterial communities across a chronosequence of drained lake basins in Arctic Alaska.

scientific article published on 18 December 2015

Author Correction: Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life.

scientific article published on 12 December 2017

Automated organelle-based colocalization in whole-cell imaging

scientific article published on November 2009

Back from the dead; the curious tale of the predatory cyanobacterium Vampirovibrio chlorellavorus

scientific article published on 21 May 2015

Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics

scientific article

Borg extrachromosomal elements of methane-oxidizing archaea have conserved and expressed genetic repertoires

scientific article published in 2024

Coupling plant litter quantity to a novel metric for litter quality explains C storage changes in a thawing permafrost peatland

article by Moira Hough et al published 17 November 2021 in Global Change Biology

Determination of protein subcellular localization in apicomplexan parasites

scientific article published on 17 September 2012

Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., ...

scholarly article published on 14 December 2018

Discovery of a novel methanogen prevalent in thawing permafrost

scientific article

Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi

scientific article published on 16 January 2019

Does the high gene density in the sponge NK homeobox gene cluster reflect limited regulatory capacity?

scientific article

Drug target prediction and prioritization: using orthology to predict essentiality in parasite genomes

scientific article published in 2010

Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals

scientific article (publication date: October 2008)

Functional capacities of microbial communities to carry out large scale geochemical processes are maintained during ex situ anaerobic incubation

scientific article published on 25 February 2021

Genome-centric view of carbon processing in thawing permafrost

scientific article published in Nature

GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes.

scientific article published on 19 March 2018

GroopM: an automated tool for the recovery of population genomes from related metagenomes.

scientific article

Host-linked soil viral ecology along a permafrost thaw gradient

article

Identification of Genes Differentially Expressed in the Ganglia of GrowingHaliotis asinina

article

In silico prediction of antimalarial drug target candidates

scientific article published on 17 July 2012

Marked changes in neuropeptide expression accompany broadcast spawnings in the gastropod Haliotis asinina

scientific article

Methane dynamics regulated by microbial community response to permafrost thaw

scientific article published in October 2014

Methanotrophy across a natural permafrost thaw environment

article

Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota

scientific article

Methylotrophy in the Mire: direct and indirect routes for methane production in thawing permafrost

scientific article published on 23 January 2024

Microbial Community Analyses Inform Geochemical Reaction Network Models for Predicting Pathways of Greenhouse Gas Production

scientific article

Microbial polyphenol metabolism is part of the thawing permafrost carbon cycle

scientific article published on 28 May 2024

OrfM: a fast open reading frame predictor for metagenomic data

scientific article

Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum

scientific article

Parallel evolution of nacre building gene sets in molluscs

scientific article

Plant organic matter inputs exert a strong control on soil organic matter decomposition in a thawing permafrost peatland

scientific article published in 2022

REX1 and Pf62: are they one and the same?

scientific article published on April 2009

Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life

scientific article published on 11 September 2017

Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases

scientific article published on 01 December 2019

Sequenceserver: a modern graphical user interface for custom BLAST databases

Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing

article

Successional dynamics and alternative stable states in a saline activated sludge microbial community over 9 years

scientific article published on 06 October 2021

The Amphimedon queenslandica genome and the evolution of animal complexity ⬇️

scientific article

The Widespread Prevalence and Functional Significance of Silk-Like Structural Proteins in Metazoan Biological Materials.

scientific article

Undinarchaeota illuminate DPANN phylogeny and the impact of gene transfer on archaeal evolution

scientific article published on 07 August 2020

Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics

scientific article

Widespread transcriptional changes pre-empt the critical pelagic-benthic transition in the vetigastropod Haliotis asinina.

scientific article published on 29 January 2009

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