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List of works by Chunhua Weng

A Data Quality Assessment Guideline for Electronic Health Record Data Reuse.

scientific article published on 4 September 2017

A Harmonized Data Quality Assessment Terminology and Framework for the Secondary Use of Electronic Health Record Data

scientific article

A Method for Harmonization of Clinical Abbreviation and Acronym Sense Inventories

scientific article published on 07 November 2018

A centralized research data repository enhances retrospective outcomes research capacity: a case report ⬇️

scientific article published on January 15, 2013

A collaborative approach to developing an electronic health record phenotyping algorithm for drug-induced liver injury

scientific article published on 09 July 2013

A collaborative clinical trial protocol writing system

scientific article published in January 2004

A conceptual framework for evaluating data suitability for observational studies

scientific article published on 8 September 2017

A data-driven concept schema for defining clinical research data needs

scientific article

A human-computer collaborative approach to identifying common data elements in clinical trial eligibility criteria

scientific article

A method for analyzing commonalities in clinical trial target populations

scientific article published on 14 November 2014

A method for probing disease relatedness using common clinical eligibility criteria ⬇️

scientific article published on January 1, 2013

A multi-site cognitive task analysis for biomedical query mediation

scientific article published on 16 June 2016

A neuro-symbolic method for understanding free-text medical evidence

scientific article published on 01 July 2021

A real-time screening alert improves patient recruitment efficiency ⬇️

scientific article published on October 22, 2011

A review of auditing methods applied to the content of controlled biomedical terminologies

scientific article

A survey of practices for the use of electronic health records to support research recruitment

article

A two-site survey of medical center personnel's willingness to share clinical data for research: implications for reproducible health NLP research

scholarly article by Chunhua Weng et al published 4 April 2019 in BMC Medical Informatics and Decision Making

Adapting electronic health records-derived phenotypes to claims data: Lessons learned in using limited clinical data for phenotyping

scientific article published on 19 December 2019

An Integrated Model for Patient Care and Clinical Trials (IMPACT) to support clinical research visit scheduling workflow for future learning health systems

scientific article published on 16 May 2013

An Interoperable Similarity-based Cohort Identification Method Using the OMOP Common Data Model version 5.0.

scientific article published on 08 June 2017

An ethnographic study of collaborative clinical trial protocol writing.

scientific article

An initial log analysis of usage patterns on a research networking system

scientific article

Assessing the Collective Population Representativeness of Related Type 2 Diabetes Trials by Combining Public Data from ClinicalTrials.gov and NHANES.

scientific article

Associating co-authorship patterns with publications in high-impact journals

scientific article

Association of Genetic Risk of Obesity with Postoperative Complications Using Mendelian Randomization

scientific article published on 01 January 2020

Association of Thyroid Function Genetic Predictors With Atrial Fibrillation: A Phenome-Wide Association Study and Inverse-Variance Weighted Average Meta-analysis

scientific article published on 01 February 2019

Asynchronous communication among clinical researchers: a study for systems design

scientific article published on 01 October 2005

Automated learning of domain taxonomies from text using background knowledge

scientific article published on 02 September 2016

Automatic generation of investigator bibliographies for institutional research networking systems

scientific article

Bacterial clinical infectious diseases ontology (BCIDO) dataset

scientific article published on 16 July 2016

Building a Semantic Web-based Metadata Repository for Facilitating Detailed Clinical Modeling in Cancer Genome Studies ⬇️

Building a semantic web-based metadata repository for facilitating detailed clinical modeling in cancer genome studies

scientific article

Call for Papers: Deep Phenotyping for Precision Medicine

scientific article published on 29 September 2018

Case-based reasoning using electronic health records efficiently identifies eligible patients for clinical trials

scientific article published on 13 March 2015

Characterization of the biomedical query mediation process

scientific article published on 18 March 2013

Clinical data quality: a data life cycle perspective

scientific article published on 23 February 2019

Clinical research informatics: a conceptual perspective ⬇️

scientific article published on April 20, 2012

Clustering clinical trials with similar eligibility criteria features

scientific article

Columbia Open Health Data for COVID-19 Research: Database Analysis

scientific article published on 30 September 2021

Columbia Open Health Data, clinical concept prevalence and co-occurrence from electronic health records

article

Combining PubMed knowledge and EHR data to develop a weighted bayesian network for pancreatic cancer prediction

scientific article

Combining expert knowledge and knowledge automatically acquired from electronic data sources for continued ontology evaluation and improvement

scientific article

Combining human and machine intelligence for clinical trial eligibility querying

scientific article published on 01 June 2022

Comparing ICD9-encoded diagnoses and NLP-processed discharge summaries for clinical trials pre-screening: a case study

scientific article

Comparing the effectiveness of a clinical registry and a clinical data warehouse for supporting clinical trial recruitment: a case study ⬇️

scientific article published on November 13, 2010

Complexities, variations, and errors of numbering within clinical notes: the potential impact on information extraction and cohort-identification

Considerations for using research data to verify clinical data accuracy

scientific article

Could Patient Self-reported Health Data Complement EHR for Phenotyping?

scientific article published on 14 November 2014

Criteria2Query: a natural language interface to clinical databases for cohort definition

article published in 2019

DREAM: Classification scheme for dialog acts in clinical research query mediation

scientific article published on 30 November 2015

Deep Phenotyping: Embracing Complexity and Temporality-Towards Scalability, Portability, and Interoperability

scientific article published on 23 April 2020

Defining a comprehensive verotype using electronic health records for personalized medicine

scientific article published on 03 September 2013

Defining and measuring completeness of electronic health records for secondary use.

scientific article published on 29 June 2013

Design and evaluation of a bacterial clinical infectious diseases ontology

scientific article

Detecting potential pleiotropy across cardiovascular and neurological diseases using univariate, bivariate, and multivariate methods on 43,870 individuals from the eMERGE network

Developing a multivariable prognostic model for pancreatic endocrine tumors using the clinical data warehouse resources of a single institution

scientific article

Development and validation of an electronic phenotyping algorithm for chronic kidney disease

scientific article published on 14 November 2014

Discovering medical conditions associated with periodontitis using linked electronic health records

scientific article published on 15 March 2013

Doc2Hpo: a web application for efficient and accurate HPO concept curation

scientific article published on 01 July 2019

Dynamic categorization of clinical research eligibility criteria by hierarchical clustering

scientific article (publication date: December 2011)

ECRL: an eligibility criteria representation language based on the UMLS Semantic Network

scientific article

Electronic screening improves efficiency in clinical trial recruitment

scientific article (publication date: 2009)

EliIE: An open-source information extraction system for clinical trial eligibility criteria.

scientific article published on April 2017

EliXR-TIME: A Temporal Knowledge Representation for Clinical Research Eligibility Criteria ⬇️

scientific article published on March 19, 2012

EliXR: an approach to eligibility criteria extraction and representation

scientific article published on 31 July 2011

Enhancing electronic health records to support clinical research

scientific article published on 7 April 2014

Evaluation considerations for EHR-based phenotyping algorithms: A case study for drug-induced liver injury

scientific article published on 18 March 2013

Evaluation of the cost and effectiveness of diverse recruitment methods for a genetic screening study

scientific article published on 01 April 2019

Extracting and Normalizing Temporal Expressions in Clinical Data Requests from Researchers

Facilitating biomedical researchers' interrogation of electronic health record data: Ideas from outside of biomedical informatics

scientific article

Formal representation of eligibility criteria: a literature review

scientific article

From expert-derived user needs to user-perceived ease of use and usefulness: a two-phase mixed-methods evaluation framework

scientific article

GeneLiFT: A novel test to facilitate rapid screening of genetic literacy in a diverse population undergoing genetic testing

scientific article published on 26 December 2020

Harmonizing Outcomes for Genomic Medicine: Comparison of eMERGE Outcomes to ClinGen Outcome/Intervention Pairs

article

Hidden in plain sight: bias towards sick patients when sampling patients with sufficient electronic health record data for research

scientific article

How Have Cancer Clinical Trial Eligibility Criteria Evolved Over Time?

scientific article published on 20 July 2016

Identifying interdisciplinary research priorities to prevent and treat pediatric obesity in New York City

scientific article published on August 2010

Inference of Causal Relationships Between Genetic Risk Factors for Cardiometabolic Phenotypes and Female‐Specific Health Conditions

scientific article published in 2023

Informatics tools for meeting information and communication needs related to interdisciplinary research competency development

scientific article published on 6 November 2008

Leveraging dialog systems research to assist biomedical researchers' interrogation of Big Clinical Data

scientific article

Methods and dimensions of electronic health record data quality assessment: enabling reuse for clinical research

scientific article (publication date: 2013)

Modeling prognostic factors in resectable pancreatic adenocarcinomas

scientific article

Multivariate analysis of the population representativeness of related clinical studies

scientific article published on 25 January 2016

Opportunities for genomic clinical decision support interventions

scientific article published on 19 September 2013

Optimizing Clinical Research Participant Selection with Informatics

scientific article

Participatory design of a collaborative clinical trial protocol writing system.

scientific article published on 23 June 2006

Pathogenic Mutations in Cancer-Predisposing Genes: A Survey of 300 Patients with Whole-Genome Sequencing and Lifetime Electronic Health Records

scientific article

Pathway analysis of genomic pathology tests for prognostic cancer subtyping

scientific article published on 06 September 2019

Practical considerations in genomic decision support: The eMERGE experience

scientific article

Predicting New Target Conditions for Drug Retesting Using Temporal Patterns in Clinical Trials: A Proof of Concept.

scientific article published on 25 March 2015

Prediction of black box warning by mining patterns of Convergent Focus Shift in clinical trial study populations using linked public data

scientific article

Quality Assurance of Cancer Study Common Data Elements Using A Post-Coordination Approach

scientific article

Research Data Explorer: Lessons Learned in Design and Development of Context-based Cohort Definition and Selection

scientific article

SMASH: A Data-driven Informatics Method to Assist Experts in Characterizing Semantic Heterogeneity among Data Elements

scientific article

Scenario-based participatory design of a collaborative clinical trial protocol authoring system

scientific article published on January 2003

Secondary Use of EHR: Data Quality Issues and Informatics Opportunities.

scientific article

Sick patients have more data: the non-random completeness of electronic health records

scientific article

Similarity-Based Recommendation of New Concepts to a Terminology

scientific article

Similarity-based disease risk assessment for personal genomes: proof of concept ⬇️

scientific article published on October 22, 2011

Simulation-based Evaluation of the Generalizability Index for Study Traits

scientific article published on 5 November 2015

Supporting Collaborative Clinical Trial Protocol Writing Through an Annotation Design ⬇️

doctoral thesis by Chunhua Weng, University of Washington, 2005

Temporal analysis of the usage log of a research networking system

scientific article

The Data Gap in the EHR for Clinical Research Eligibility Screening.

scientific article

The ranking of scientists.

scientific article published on 15 February 2018

The representativeness of eligible patients in type 2 diabetes trials: a case study using GIST 2.0.

scientific article published on 13 September 2017

Toward a cognitive task analysis for biomedical query mediation

scientific article published on 7 April 2014

Towards dynamic and interactive retrieval of clinical trials using common eligibility features

scientific article published on 18 March 2013

Towards symbiosis in knowledge representation and natural language processing for structuring clinical practice guidelines

scientific article published on January 2014

Translating evidence into practice: eligibility criteria fail to eliminate clinically significant differences between real-world and study populations

scientific article published on 11 May 2020

Understanding interdisciplinary health sciences collaborations: a campus-wide survey of obesity experts

scientific article

Understanding the nature and scope of clinical research commentaries in PubMed

scientific article published on 01 March 2020

Unsupervised mining of frequent tags for clinical eligibility text indexing

scientific article

Use of Self-Service Query Tools Varies by Experience and Research Knowledge

scientific article published on January 2015

User-centered semantic harmonization: a case study.

scientific article published on 21 March 2007

Using EHRs to integrate research with patient care: promises and challenges

scientific article

Using Personal Health Records for Automated Clinical Trials Recruitment: the ePaIRing Model

scientific article

Using software to elicit user needs for clinical research visit scheduling

scientific article published on 7 April 2014

Visual aggregate analysis of eligibility features of clinical trials

scientific article

What Is Asked in Clinical Data Request Forms? A Multi-site Thematic Analysis of Forms Towards Better Data Access Support

scientific article

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