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List of works by A. Murat Eren

A Few Pseudomonas Oligotypes Dominate in the Meat and Dairy Processing Environment

scientific article published on 02 March 2017

A filtering method to generate high quality short reads using illumina paired-end technology

scientific article

A single genus in the gut microbiome reflects host preference and specificity

scientific article

Accurate and complete genomes from metagenomes

scientific article published on 18 March 2020

Anvi'o: an advanced analysis and visualization platform for 'omics data

scientific article

Author Correction: Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes

scientific article published on 01 August 2018

Author Correction: The Wolbachia mobilome in Culex pipiens includes a putative plasmid

scientific article published on 12 July 2019

B cell superantigens in the human intestinal microbiota

scientific article published on 01 August 2019

Bacterial communities in penile skin, male urethra, and vaginas of heterosexual couples with and without bacterial vaginosis

scientific article

Biochemical diversity of glycosphingolipid biosynthesis as a driver of Coccolithovirus competitive ecology

scientific article published on 20 May 2019

Co-occurring genomic capacity for anaerobic methane and dissimilatory sulfur metabolisms discovered in the Korarchaeota

scientific article published on 04 March 2019

Community-led, integrated, reproducible multi-omics with anvi'o

scientific article published on 01 January 2021

Comparison of Sewage and Animal Fecal Microbiomes by Using Oligotyping Reveals Potential Human Fecal Indicators in Multiple Taxonomic Groups

scientific article published on 31 July 2015

Composite Metagenome-Assembled Genomes Reduce the Quality of Public Genome Repositories.

scientific article published on 4 June 2019

DESMAN: a new tool for de novo extraction of strains from metagenomes.

scientific article published on 21 September 2017

DRISEE overestimates errors in metagenomic sequencing data.

scientific article

Dietary- and host-derived metabolites are used by diverse gut bacteria for anaerobic respiration

scientific article published in 2024

Discovering new indicators of fecal pollution

scientific article

Droplet-based high-throughput cultivation for accurate screening of antibiotic resistant gut microbes

scientific article published on 17 June 2020

Dynamics of tongue microbial communities with single-nucleotide resolution using oligotyping.

scientific article

Ecological succession and stochastic variation in the assembly of Arabidopsis thaliana phyllosphere communities

scientific article published on 21 January 2014

Editorial: New Insights into Microbial Ecology through Subtle Nucleotide Variation.

scientific article published on 24 August 2016

Exploring the diversity of Gardnerella vaginalis in the genitourinary tract microbiota of monogamous couples through subtle nucleotide variation.

scientific article

Extensive Modulation of the Fecal Metagenome in Children With Crohn's Disease During Exclusive Enteral Nutrition

scientific article published on 3 November 2015

FORENSIC: an Online Platform for Fecal Source Identification

scientific article published on 17 March 2020

Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome

scientific article published on 16 December 2020

Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

scientific article published in 2022

Genome reconstructions indicate the partitioning of ecological functions inside a phytoplankton bloom in the Amundsen Sea, Antarctica

scientific article published on 26 October 2015

Genomic variation in microbial populations inhabiting the marine subseafloor at deep-sea hydrothermal vents

scientific article published on 24 October 2017

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

scientific article published on 08 July 2019

Gut microbes contribute to variation in solid organ transplant outcomes in mice.

scientific article published on 25 May 2018

Guts of the Urban Ecosystem: Microbial Ecology of Sewer Infrastructure

scientific article published in 2022

Histamine-2 receptor blockers alter the fecal microbiota in premature infants.

scientific article published in April 2013

Humpback whale populations share a core skin bacterial community: towards a health index for marine mammals?

scientific article

Identifying contamination with advanced visualization and analysis practices: metagenomic approaches for eukaryotic genome assemblies

scientific article

Linking pangenomes and metagenomes: the Prochlorococcus metapangenome

scientific article published on 25 January 2018

Microbial metabolites in the marine carbon cycle

scientific article published in 2022

Microbial signals drive pre-leukaemic myeloproliferation in a Tet2-deficient host.

scientific article

Microbiome characterization by high-throughput transfer RNA sequencing and modification analysis

scientific article published in Nature Communications

Minimizing confounders and increasing data quality in murine models for studies of the gut microbiome

scientific article published on 12 July 2018

Minimum entropy decomposition: unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences

scientific article

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

scientific article

Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes

scientific article published on 11 June 2018

Oligotyping: Differentiating between closely related microbial taxa using 16S rRNA gene data.

scientific article

Patient-Specific Bacteroides Genome Variants in Pouchitis

scientific article

Peripartum Antibiotics Promote Gut Dysbiosis, Loss of Immune Tolerance, and Inflammatory Bowel Disease in Genetically Prone Offspring.

scientific article published in July 2017

Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics.

scientific article published on 30 April 2015

Recurrent patterns of microdiversity in a temperate coastal marine environment.

scientific article published on 24 October 2017

SeaBase: a multispecies transcriptomic resource and platform for gene network inference.

scientific article

Sewage reflects the distribution of human faecal Lachnospiraceae.

scientific article

Sewage reflects the microbiomes of human populations.

scientific article

Simulations predict microbial responses in the environment? This environment disagrees retrospectively.

scientific article published on 10 October 2017

Single-amino acid variants reveal evolutionary processes that shape the biogeography of a global SAR11 subclade

scientific article published on 03 September 2019

The Diversity and Functional Capacity of Microbes Associated with Coastal Macrophytes

scientific article published in 2022

The Wolbachia mobilome in Culex pipiens includes a putative plasmid

scientific article published on 05 March 2019

Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics.

scientific article

Transcriptome-wide reprogramming of N6-methyladenosine modification by the mouse microbiome

scientific article published on 17 December 2018

Unifying the known and unknown microbial coding sequence space

scientific article published on 31 March 2022

Vaginal microbiome in early pregnancy and subsequent risk of spontaneous preterm birth: a case-control study

scientific article published on 27 June 2018

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