List of works - Sarah A Killcoyne

Adaptable data management for systems biology investigations

scientific article

Comparison of Phenotypes and Risk Factors for Esophageal Adenocarcinoma at Present vs Prior Decades

scientific article published on 08 November 2019

Cytoscape: a community-based framework for network modeling

scientific article published on 01 January 2009

FIGG: simulating populations of whole genome sequences for heterogeneous data analyses

scientific article

Genomic copy number predicts esophageal cancer years before transformation

scientific article published on 07 September 2020

Hydra: a scalable proteomic search engine which utilizes the Hadoop distributed computing framework

scientific article

Identification of Prognostic Phenotypes of Esophageal Adenocarcinoma in 2 Independent Cohorts

scientific article published on 27 August 2018

Identification of Subtypes of Barrett's Esophagus and Esophageal Adenocarcinoma Based on DNA Methylation Profiles and Integration of Transcriptome and Genome Data

scientific article published on 04 February 2020

Identification of large-scale genomic variation in cancer genomes using in silico reference models

scientific article

Integration of biological networks and gene expression data using Cytoscape

scientific article (publication date: 2007)

Interfaces to PeptideAtlas: a case study of standard data access systems.

scientific article

Managing Chaos: Lessons Learned Developing Software in the Life Sciences.

scientific article

Methods for visual mining of genomic and proteomic data atlases

scientific article

Mining PeptideAtlas for biomarkers and therapeutics in human disease

scientific article

Practical early cancer detection: distinguishing stable from unstable genomes in pre-cancerous tissues

scientific article published on 06 November 2020

Somatic mutation distributions in cancer genomes vary with three-dimensional chromatin structure

scientific article published on 05 October 2020

T1DBase: integration and presentation of complex data for type 1 diabetes research

scientific article

The landscape of selection in 551 esophageal adenocarcinomas defines genomic biomarkers for the clinic

scientific article published on 04 February 2019

List of works by Sarah A Killcoyne

Adaptable data management for systems biology investigations

Comparison of Phenotypes and Risk Factors for Esophageal Adenocarcinoma at Present vs Prior Decades

Cytoscape: a community-based framework for network modeling

FIGG: simulating populations of whole genome sequences for heterogeneous data analyses

Genomic copy number predicts esophageal cancer years before transformation

Hydra: a scalable proteomic search engine which utilizes the Hadoop distributed computing framework

Identification of Prognostic Phenotypes of Esophageal Adenocarcinoma in 2 Independent Cohorts

Identification of Subtypes of Barrett's Esophagus and Esophageal Adenocarcinoma Based on DNA Methylation Profiles and Integration of Transcriptome and Genome Data

Identification of large-scale genomic variation in cancer genomes using in silico reference models

Integration of biological networks and gene expression data using Cytoscape

Interfaces to PeptideAtlas: a case study of standard data access systems.

Managing Chaos: Lessons Learned Developing Software in the Life Sciences.

Methods for visual mining of genomic and proteomic data atlases

Mining PeptideAtlas for biomarkers and therapeutics in human disease

Practical early cancer detection: distinguishing stable from unstable genomes in pre-cancerous tissues

Somatic mutation distributions in cancer genomes vary with three-dimensional chromatin structure

T1DBase: integration and presentation of complex data for type 1 diabetes research

The landscape of selection in 551 esophageal adenocarcinomas defines genomic biomarkers for the clinic