List of works - Razif R Gabdoulline

3DTF: a web server for predicting transcription factor PWMs using 3D structure-based energy calculations

scientific article published on 11 June 2012

Biomolecular diffusional association

scientific article

Bridging from molecular simulation to biochemical networks.

scientific article

Brownian Dynamics Simulation of Protein–Protein Diffusional Encounter ⬇️

scientific article published on March 1, 1998

Brownian dynamics simulation of protein solutions: structural and dynamical properties

scientific article published on December 2010

Calculating enzyme kinetic parameters from protein structures

scientific article published on February 2008

Comparison of the binding and reactivity of plant and mammalian peroxidases to indole derivatives by computational docking

scientific article published in March 2006

Computational approaches to structural and functional analysis of plastocyanin and other blue copper proteins.

scientific article published on May 2004

Cross-species analysis of the glycolytic pathway by comparison of molecular interaction fields

scientific article published on 7 September 2009

Diffusional encounter of barnase and barstar

scientific article published on 16 December 2005

Electrostatic steering and ionic tethering in enzyme–ligand binding: Insights from simulations ⬇️

scientific article published on May 26, 1998

How optimal are the binding energetics of barnase and barstar?

scientific article published on September 2004

MolSurfer: A macromolecular interface navigator

scientific article

MolSurfer: two-dimensional maps for navigating three-dimensional structures of proteins

scientific article published on 01 July 1999

On the Contributions of Diffusion and Thermal Activation to Electron Transfer betweenPhormidium laminosumPlastocyanin and Cytochromef: Brownian Dynamics Simulations with Explicit Modeling of Nonpolar Desolvation Interactions and Electron Transfer Eve

article

On the structure and dynamics of the complex of the nucleosome and the linker histone

scientific article published on 25 February 2011

ProSAT: functional annotation of protein 3D structures.

scientific article

Protein-protein association: investigation of factors influencing association rates by Brownian dynamics simulations

article

Protein-protein docking by simulating the process of association subject to biochemical constraints

scientific article published in June 2008

ROS-dependent activation of JNK converts p53 into an efficient inhibitor of oncogenes leading to robust apoptosis.

scientific article published on 10 January 2014

SYCAMORE--a systems biology computational analysis and modeling research environment

scientific article

Species dependence of enzyme-substrate encounter rates for triose phosphate isomerases ⬇️

scientific article published on June 1, 1998

The acidic, glutamine-rich Mpn474 protein of Mycoplasma pneumoniae is surface exposed and covers the complete cell.

scientific article published in April 2008

qPIPSA: relating enzymatic kinetic parameters and interaction fields.

scientific article

webPIPSA: a web server for the comparison of protein interaction properties

scientific article published on 17 April 2008

List of works by Razif R Gabdoulline

3DTF: a web server for predicting transcription factor PWMs using 3D structure-based energy calculations

Biomolecular diffusional association

Bridging from molecular simulation to biochemical networks.

Brownian Dynamics Simulation of Protein–Protein Diffusional Encounter ⬇️

Brownian dynamics simulation of protein solutions: structural and dynamical properties

Calculating enzyme kinetic parameters from protein structures

Comparison of the binding and reactivity of plant and mammalian peroxidases to indole derivatives by computational docking

Computational approaches to structural and functional analysis of plastocyanin and other blue copper proteins.

Cross-species analysis of the glycolytic pathway by comparison of molecular interaction fields

Diffusional encounter of barnase and barstar

Electrostatic steering and ionic tethering in enzyme–ligand binding: Insights from simulations ⬇️

How optimal are the binding energetics of barnase and barstar?

MolSurfer: A macromolecular interface navigator

MolSurfer: two-dimensional maps for navigating three-dimensional structures of proteins

On the Contributions of Diffusion and Thermal Activation to Electron Transfer betweenPhormidium laminosumPlastocyanin and Cytochromef: Brownian Dynamics Simulations with Explicit Modeling of Nonpolar Desolvation Interactions and Electron Transfer Eve

On the structure and dynamics of the complex of the nucleosome and the linker histone

ProSAT: functional annotation of protein 3D structures.

Protein-protein association: investigation of factors influencing association rates by Brownian dynamics simulations

Protein-protein docking by simulating the process of association subject to biochemical constraints

ROS-dependent activation of JNK converts p53 into an efficient inhibitor of oncogenes leading to robust apoptosis.

SYCAMORE--a systems biology computational analysis and modeling research environment

Species dependence of enzyme-substrate encounter rates for triose phosphate isomerases ⬇️

The acidic, glutamine-rich Mpn474 protein of Mycoplasma pneumoniae is surface exposed and covers the complete cell.

qPIPSA: relating enzymatic kinetic parameters and interaction fields.

webPIPSA: a web server for the comparison of protein interaction properties