List of works - Christophe Godin

A computational framework for 3D mechanical modeling of plant morphogenesis with cellular resolution

scientific article (publication date: 2015)

A data-driven integrative model of sepal primordium polarity in Arabidopsis

scientific article (publication date: December 2011)

A multi-scale model of the interplay between cell signalling and hormone transport in specifying the root meristem of Arabidopsis thaliana

scientific article

A protocol to analyse cellular dynamics during plant development.

scientific article published in December 2005

A stochastic multicellular model identifies biological watermarks from disorders in self-organized patterns of phyllotaxis.

scientific article published on 6 July 2016

Algorithmic height compression of unordered trees

scientific article published on 6 November 2015

An auxin transport-based model of root branching in Arabidopsis thaliana

scientific article

Auxin fluxes in the root apex co-regulate gravitropism and lateral root initiation.

scientific article published on 23 August 2007

BVPy: A FEniCS-based Python package to ease the expression and study of boundary value problems in Biology.

scientific article published on 21 March 2021

Benchmarking of deep learning algorithms for 3D instance segmentation of confocal image datasets

scientific article published on 14 April 2022

Computer simulations reveal properties of the cell-cell signaling network at the shoot apex in Arabidopsis

scientific article

Contact area-dependent cell communication and the morphological invariance of ascidian embryogenesis

scientific article published on 01 July 2020

Cortical tension overrides geometrical cues to orient microtubules in confined protoplasts

scientific article published on 07 December 2020

DRACO-STEM: An Automatic Tool to Generate High-Quality 3D Meshes of Shoot Apical Meristem Tissue at Cell Resolution

scientific article

Definition of architectural ideotypes for good yield capacity in Coffea canephora

scientific article

Exploring within-tree architectural development of two apple tree cultivars over 6 years

scientific article

Flux-based transport enhancement as a plausible unifying mechanism for auxin transport in meristem development

scientific article

Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution.

scientific article

Integrating Physiology and Architecture in Models of Fruit Expansion.

scientific article

Integration of hormonal signaling networks and mobile microRNAs is required for vascular patterning in Arabidopsis roots

scientific article

Lateral root morphogenesis is dependent on the mechanical properties of the overlaying tissues

scientific article

MAppleT: simulation of apple tree development using mixed stochastic and biomechanical models

article

Multiscale systems analysis of root growth and development: modeling beyond the network and cellular scales

scientific article published on 30 October 2012

Phyllotaxis as geometric canalization during plant development

scientific article published on 12 October 2020

Phyllotaxis: from patterns of organogenesis at the meristem to shoot architecture.

scientific article

Quantifying the Degree of Self-Nestedness of Trees: Application to the Structural Analysis of Plants ⬇️

scientific article published on October 1, 2010

Regulation of plant cell wall stiffness by mechanical stress: a mesoscale physical model

article

Similarities and gradients in growth unit branching patterns during ontogeny in "Fuji" apple trees: a stochastic approach

scientific article published on 25 August 2006

Simulating Turgor-Induced Stress Patterns in Multilayered Plant Tissues

scientific article published on 11 June 2019

Sugar availability suppresses the auxin-induced strigolactone pathway to promote bud outgrowth

scientific article published on 20 October 2019

Systems analysis of auxin transport in the Arabidopsis root apex

scientific article

Temporal integration of auxin information for the regulation of patterning

scientific article published on 07 May 2020

The auxin signalling network translates dynamic input into robust patterning at the shoot apex

scientific article

Understanding patchy landscape dynamics: towards a landscape language

scientific article

List of works by Christophe Godin

A computational framework for 3D mechanical modeling of plant morphogenesis with cellular resolution

A data-driven integrative model of sepal primordium polarity in Arabidopsis

A multi-scale model of the interplay between cell signalling and hormone transport in specifying the root meristem of Arabidopsis thaliana

A protocol to analyse cellular dynamics during plant development.

A stochastic multicellular model identifies biological watermarks from disorders in self-organized patterns of phyllotaxis.

Algorithmic height compression of unordered trees

An auxin transport-based model of root branching in Arabidopsis thaliana

Auxin fluxes in the root apex co-regulate gravitropism and lateral root initiation.

BVPy: A FEniCS-based Python package to ease the expression and study of boundary value problems in Biology.

Benchmarking of deep learning algorithms for 3D instance segmentation of confocal image datasets

Computer simulations reveal properties of the cell-cell signaling network at the shoot apex in Arabidopsis

Contact area-dependent cell communication and the morphological invariance of ascidian embryogenesis

Cortical tension overrides geometrical cues to orient microtubules in confined protoplasts

DRACO-STEM: An Automatic Tool to Generate High-Quality 3D Meshes of Shoot Apical Meristem Tissue at Cell Resolution

Definition of architectural ideotypes for good yield capacity in Coffea canephora

Exploring within-tree architectural development of two apple tree cultivars over 6 years

Flux-based transport enhancement as a plausible unifying mechanism for auxin transport in meristem development

Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution.

Integrating Physiology and Architecture in Models of Fruit Expansion.

Integration of hormonal signaling networks and mobile microRNAs is required for vascular patterning in Arabidopsis roots

Lateral root morphogenesis is dependent on the mechanical properties of the overlaying tissues

MAppleT: simulation of apple tree development using mixed stochastic and biomechanical models

Multiscale systems analysis of root growth and development: modeling beyond the network and cellular scales

Phyllotaxis as geometric canalization during plant development

Phyllotaxis: from patterns of organogenesis at the meristem to shoot architecture.

Quantifying the Degree of Self-Nestedness of Trees: Application to the Structural Analysis of Plants ⬇️

Regulation of plant cell wall stiffness by mechanical stress: a mesoscale physical model

Similarities and gradients in growth unit branching patterns during ontogeny in "Fuji" apple trees: a stochastic approach

Simulating Turgor-Induced Stress Patterns in Multilayered Plant Tissues

Sugar availability suppresses the auxin-induced strigolactone pathway to promote bud outgrowth

Systems analysis of auxin transport in the Arabidopsis root apex

Temporal integration of auxin information for the regulation of patterning

The auxin signalling network translates dynamic input into robust patterning at the shoot apex

Understanding patchy landscape dynamics: towards a landscape language