List of works by David Couvin

A first insight on the population structure of Mycobacterium tuberculosis complex as studied by spoligotyping and MIRU-VNTRs in Santiago, Chile

scientific article

A snapshot of the predominant single nucleotide polymorphism cluster groups of Mycobacterium tuberculosis clinical isolates in Delhi, India

scientific article published on 25 July 2016

Analysis of Mycobacterium tuberculosis Genotypic Lineage Distribution in Chile and Neighboring Countries

scientific article

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins.

scientific article published in July 2018

Characterization of the genetic diversity of extensively-drug resistant Mycobacterium tuberculosis clinical isolates from pulmonary tuberculosis patients in Peru

scientific article

Clonal expansion across the seas as seen through CPLP-TB database: A joint effort in cataloguing Mycobacterium tuberculosis genetic diversity in Portuguese-speaking countries

article

Combined Genotypic, Phylogenetic, and Epidemiologic Analyses of Mycobacterium tuberculosis Genetic Diversity in the Rhône Alpes Region, France

scientific article

Comparative study of genotypes of Mycobacterium tuberculosis from a Northern Indian setting with strains reported from other parts of India and neighboring countries

scientific article published on 10 April 2017

First approach to the population structure of Mycobacterium tuberculosis complex in the indigenous population in Puerto Nariño-Amazonas, Colombia

scientific article published on 07 January 2021

First insight into the molecular epidemiology of Mycobacterium tuberculosis in Santa Catarina, southern Brazil

scientific article

Four year longitudinal study of Mycobacterium tuberculosis complex isolates in a region of North-Eastern Italy

scientific article published on 10 May 2014

Genetic diversity among multidrug-resistant Mycobacterium tuberculosis strains in Mexico.

scientific article published on 16 January 2013

Genetic diversity and drug susceptibility profile of Mycobacterium tuberculosis isolated from different regions of India

scientific article published on 29 April 2015

Genetic diversity of Mycobacterium tuberculosis from Pará, Brazil, reveals a higher frequency of ancestral strains than previously reported in South America.

scientific article published on 25 October 2017

Genetic diversity of Mycobacterium tuberculosis in Peru and exploration of phylogenetic associations with drug resistance

scientific article (publication date: 2013)

Genotypic characterization and historical perspective of Mycobacterium tuberculosis among older and younger Finns, 2008-2011.

scientific article published on November 2014

Genotypic diversity of Mycobacterium tuberculosis in Buenos Aires, Argentina.

scientific article published on 6 April 2018

Geospatial distribution of Mycobacterium tuberculosis genotypes in Africa

scientific article published in PLoS ONE

Heterogeneity among Mycobacterium ulcerans from French Guiana revealed by multilocus variable number tandem repeat analysis (MLVA)

scientific article published on 23 February 2015

High Prevalence of <i>bla</i> <sub><i>CTXM</i>-1</sub>/IncI1-Iγ/ST3 Plasmids in Extended-Spectrum β-Lactamase-Producing <i>Escherichia coli</i> Isolates Collected From Domestic Animals in Guadeloupe (French West Indies)

scientific article published on 16 May 2022

Human multidrug-resistant Mycobacterium bovis infection in Mexico.

scientific article published on 13 August 2015

Insights on the Mycobacterium tuberculosis population structure associated with migrants from Portuguese-speaking countries over a three-year period in Greater Lisbon, Portugal: Implications at the public health level

scientific article published on 27 March 2019

Local adaptive evolution of two distinct clades of Beijing and T families of Mycobacterium tuberculosis in Chongqing: a Bayesian population structure and phylogenetic study

scientific article published on 01 June 2020

MTBCtools: a non-exhaustive list of software tools/resources for bioinformatics analyses of Mycobacterium tuberculosis complex, the causative agent of tuberculosis

scientific article published in 2021

Macro-geographical specificities of the prevailing tuberculosis epidemic as seen through SITVIT2, an updated version of the Mycobacterium tuberculosis genotyping database

scientific article published on 26 December 2018

Mapping of Mycobacterium tuberculosis Complex Genetic Diversity Profiles in Tanzania and Other African Countries

scientific article

Mixed Infections and Rifampin Heteroresistance among Mycobacterium tuberculosis Clinical Isolates

scientific article published on 22 April 2015

Molecular epidemiology and evolutionary genetics of Mycobacterium tuberculosis isolated from different parts of India

article

Molecular epidemiology and genotyping of Mycobacterium tuberculosis isolated in Baghdad.

scientific article published on 26 February 2014

Molecular epidemiology of tuberculosis in Finland, 2008-2011

scientific article (publication date: 2013)

Mycobacterial biomaterials and resources for researchers

scientific article published on 01 June 2018

Mycobacterium tuberculosis causing tuberculous lymphadenitis in Maputo, Mozambique

scientific article published on 21 November 2015

Mycobacterium tuberculosis genotypes and predominant clones among the multidrug-resistant isolates in Spain 1998-2005.

scientific article published on 05 August 2017

Mycobacterium tuberculosis strains potentially involved in the TB epidemic in Sweden a century ago

scientific article published in 2012

Novel methods included in SpolLineages tool for fast and precise prediction of Mycobacterium tuberculosis complex spoligotype families

scientific article published on 01 December 2020

Phylogenetic associations with demographic, epidemiological and drug resistance characteristics of Mycobacterium tuberculosis lineages in the SITVIT2 database: Macro- and micro-geographical cleavages and phylogeographical specificities

scholarly article by Nalin Rastogi & David Couvin published March 2015 in International journal of mycobacteriology

Phylogenetic associations with drug-resistant Mycobacterium tuberculosis isolates in a paediatric population

scientific article

Population structure among mycobacterium tuberculosis isolates from pulmonary tuberculosis patients in Colombia

scientific article (publication date: 2014)

Population structure and circulating genotypes of drug-sensitive and drug-resistant Mycobacterium tuberculosis clinical isolates in São Paulo state, Brazil

scientific article

Population structure of multidrug-resistant Mycobacterium tuberculosis clinical isolates in Colombia

scientific article published on 17 October 2020

Predicting Mycobacterium tuberculosis complex clades using knowledge-based Bayesian networks

scientific article (publication date: 2014)

Predominance of Uganda genotype of Mycobacterium tuberculosis isolated from Ugandan patients with tuberculous lymphadenitis

scientific article

SITVITBovis-a publicly available database and mapping tool to get an improved overview of animal and human cases caused by Mycobacterium bovis

SITVITWEB--a publicly available international multimarker database for studying Mycobacterium tuberculosis genetic diversity and molecular epidemiology

scientific article published on 17 February 2012

Snapshot of the genetic diversity of Mycobacterium tuberculosis isolates in Iraq

scholarly article by Mohanad Mohsin Ahmed et al published September 2014 in International journal of mycobacteriology

SpolSimilaritySearch - A web tool to compare and search similarities between spoligotypes of Mycobacterium tuberculosis complex

scientific article

Strain classification of Mycobacterium tuberculosis isolates in Brazil based on genotypes obtained by spoligotyping, mycobacterial interspersed repetitive unit typing and the presence of large sequence and single nucleotide polymorphism

scientific article

Strain diversity of Mycobacterium tuberculosis isolates from pulmonary tuberculosis patients in Afar pastoral region of Ethiopia.

scientific article published on 6 March 2014

Study of Mycobacterium tuberculosis complex genotypic diversity in Malaysia reveals a predominance of ancestral East-African-Indian lineage with a Malaysia-specific signature

scientific article

The Association between Mycobacterium Tuberculosis Genotype and Drug Resistance in Peru

scientific article

The Guinea-Bissau family of Mycobacterium tuberculosis complex revisited

scientific article

The population structure of drug-resistant Mycobacterium tuberculosis clinical isolates from Sichuan in China

scientific article published on 2 October 2011

Tuberculosis - A global emergency: Tools and methods to monitor, understand, and control the epidemic with specific example of the Beijing lineage

scientific article published on 13 February 2015

Two tales: Worldwide distribution of Central Asian (CAS) versus ancestral East-African Indian (EAI) lineages of Mycobacterium tuberculosis underlines a remarkable cleavage for phylogeographical, epidemiological and demographical characteristics

scientific article published on 12 July 2019

simpiTB – a pipeline designed to extract meaningful information from whole genome sequencing data of Mycobacterium tuberculosis complex, allows to combine genomic, phylogenetic and clustering analyses in existing SITVIT databases

scientific article published in 2023

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