List of works - Christopher C.R. Allen

A Depth Resolved Insight into Benzoyl CoA Reductase and Benzoate Dioxygenase Gene Copy Numbers within a Marine Sediment Associated with Methane Seepage

article

A Microbial Link to Weathering of Postglacial Rocks and Sediments, Mount Viso Area, Western Alps, Demonstrated through Analysis of a Soil/Paleosol Bio/Chronosequence

2016 scholarly article by Mahaney et al.

A bacterial enrichment study and overview of the extractable lipids from paleosols in the Dry Valleys, Antarctica: implications for future Mars reconnaissance

scientific article published on 05 May 2011

Abundance and diversity of sedimentary bacterial communities in a coastal productive setting in the Western Irish Sea

scholarly article by S.S. O'Reilly published in February 2016

Aerobic metabolism of 4-hydroxybenzoic acid in Archaea via an unusual pathway involving an intramolecular migration (NIH shift).

scientific article published on December 2002

An inventory of potentially habitable environments on Mars: Geological and biological perspectives

Analysis of transduction in wastewater bacterial populations by targeting the phage-derived 16S rRNA gene sequences

scientific article

Analysis of viral and bacterial communities in groundwater associated with contaminated land

scientific article published on 03 December 2018

Application of ω-Transaminases in the Pharmaceutical Industry.

scientific article published on 18 December 2017

Azaarene cis-dihydrodiol-derived 2,2'-bipyridine ligands for asymmetric allylic oxidation and cyclopropanation.

scientific article

Bacterial dioxygenase- and monooxygenase-catalysed sulfoxidation of benzo[b]thiophenes

scientific article published on 01 December 2011

Biodegradation and Rhodococcus--masters of catabolic versatility.

scientific article

Biodegradation by members of the genus Rhodococcus: biochemistry, physiology, and genetic adaptation

scientific article published on January 2006

Biomarkers reveal the effects of hydrography on the sources and fate of marine and terrestrial organic matter in the western Irish Sea

article

Biostratigraphic Evidence Relating to the Age-Old Question of Hannibal's Invasion of Italy, I: History and Geological Reconstruction

article

Biostratigraphic Evidence Relating to the Age-Old Question of Hannibal's Invasion of Italy, II: Chemical Biomarkers and Microbial Signatures

article

Characterisation of a solvent-tolerant haloarchaeal (R)-selective transaminase isolated from a Triassic period salt mine

scientific article published on 23 May 2019

Characterization of a novel ω-transaminase from a Triassic salt mine metagenome

scientific article published on 14 August 2018

Chemoenzymatic Synthesis of (-)-Ribisins A and B from Dibenzo[b,d]furan

scientific article published on 18 November 2019

Chemoenzymatic formal synthesis of (-)- and (+)-epibatidine

scientific article published on 27 February 2012

Chemoenzymatic synthesis of a mixed phosphine-phosphine oxide catalyst and its application to asymmetric allylation of aldehydes and hydrogenation of alkenes.

scientific article published on 4 January 2012

Chemoenzymatic synthesis of carbasugars (+)-pericosines A-C from diverse aromatic cis-dihydrodiol precursors

scientific article published in May 2010

Chemoenzymatic synthesis of carbasugars from iodobenzene.

scientific article published on 18 April 2005

Chemoenzymatic synthesis of chiral 2,2'-bipyridine ligands and their N-oxide derivatives: applications in the asymmetric aminolysis of epoxides and asymmetric allylation of aldehydes

scientific article published on 5 January 2010

Chemoenzymatic synthesis of enantiopure hydroxy sulfoxides derived from substituted arenes.

scientific article published in February 2016

Chemoenzymatic synthesis of monocyclic arene oxides and arene hydrates from substituted benzene substrates.

scientific article

Chemoenzymatic synthesis of the carbasugars carba-beta-L-galactopyranose, carba-beta-L-talopyranose and carba-alpha-L-talopyranose from methyl benzoate

scientific article published on 21 January 2010

Chemoenzymatic synthesis of the trans-dihydrodiol isomers of monosubstituted benzenes via anti-benzene dioxides.

scientific article published on 2 May 2006

Chemoenzymatic synthesis of trans-dihydrodiol derivatives of monosubstituted benzenes from the corresponding cis-dihydrodiol isomers.

scientific article published on 4 January 2007

Coleoptera and microbe biomass in Antarctic Dry Valley paleosols adjacent to the Inland Ice: Implications for Mars

article

Cosmic Airburst on Developing Allerød Substrates (Soils) in the Western Alps, Mt. Viso Area ⬇️

scientific article published in 2018

Crystallization and preliminary X-ray diffraction analysis of naphthalene dioxygenase from Rhodococcus sp. strain NCIMB 12038.

scientific article published on 23 November 2002

Dioxygenase-catalysed cis-dihydroxylation of meta-substituted phenols to yield cyclohexenone cis-diol and derived enantiopure cis-triol metabolites

scientific article published on 11 January 2011

Dioxygenase-catalysed dihydroxylation of arene cis-dihydrodiols and acetonide derivatives: a new approach to the synthesis of enantiopure tetraoxygenated bioproducts from arenes

scientific article published on 5 October 2006

Dioxygenase-catalysed oxidation of alkylaryl sulfides: sulfoxidation versus cis-dihydrodiol formation.

scientific article

Draft Genome Sequence of Rhodococcus sp. Strain NCIMB 12038, a Naphthalene-Degrading Bacterium

scientific article

Draft Genome Sequence of the Predatory Marine Bacterium Halobacteriovorax sp. Strain JY17.

scientific article published on 4 January 2018

Draft Genome Sequences of Pseudomonas putida UV4 and UV4/95, Toluene Dioxygenase-Expressing Producers of cis-1,2-Dihydrodiols.

scientific article published on 4 January 2018

Effect of soil horizon stratigraphy on the microbial ecology of alpine paleosols

scientific article published on 01 December 2018

Enantiopurity and absolute configuration determination of arene cis-dihydrodiol metabolites and derivatives using chiral boronic acids.

scientific article published on 11 October 2017

Engineering Peptides to Catalyze and Control Stabilization of Gas Hydrates: Learning From Nature

scientific article published on 17 June 2020

Evidence for cosmic airburst in the Western Alps archived in Late Glacial paleosols

scholarly article

Extent and variation of phage-borne bacterial 16S rRNA gene sequences in wastewater environments.

scientific article published on 10 June 2011

Genomes of "phiKMV-like viruses" of Pseudomonas aeruginosa contain localized single-strand interruptions.

scientific article published on 9 July 2009

Geophysical and geochemical survey of a large marine pockmark on the Malin Shelf, Ireland

scientific article

Isolation of Rhodococcus rhodochrous NCIMB13064 derivatives with new biodegradative abilities

scientific article published on 01 December 1996

Large perturbations in CO2 flux and subsequent chemosynthesis are induced in agricultural soil by the addition of elemental sulfur.

scientific article published on 5 July 2017

Late Pleistocene Glacial-Paleosol-cosmic record of the Viso Massif—France and Italy: New evidence in support of the Younger Dryas boundary (12.8 ka)

scientific article published in 2022

Magnetic-Field Manipulation of Naturally Occurring Microbial Chiral Peptides to Regulate Gas-Hydrate Formation

scientific article published on 13 October 2020

Magnetic-field effects on methane-hydrate kinetics and potential geophysical implications: Insights from non-equilibrium molecular dynamics

scientific article published on 06 January 2019

Metagenomic Characterisation of the Viral Community of Lough Neagh, the Largest Freshwater Lake in Ireland.

scientific article

Microbial ecology and geoelectric responses across a groundwater plume

scientific article

Mineralogy, chemistry and biological contingents of an early-middle Miocene Antarctic paleosol and its relevance as a Martian analogue

scholarly article by William Mahaney et al published December 2014 in Planetary and Space Science

New families of enantiopure cyclohexenone cis-diol, o-quinol dimer and hydrate metabolites from dioxygenase-catalysed dihydroxylation of phenols.

scientific article

Pf16 and phiPMW: Expanding the realm of Pseudomonas putida bacteriophages.

scientific article published on 6 September 2017

Raman Deuterium Isotope Probing Reveals Microbial Metabolism at the Single-Cell Level.

scientific article published on 14 November 2017

Rational Design of a (S)-Selective-Transaminase for Asymmetric Synthesis of (1S)-1-(1,1′-biphenyl-2-yl)ethanamine

Reassessment of the Microbial Role in Mn-Fe Nodule Genesis in Andean Paleosols

Recent developments in the analysis of the black mat layer and cosmic impact at 12.8 ka

Reconnaissance of the Hannibalic Route in the Upper Po Valley, Italy: Correlation with Biostratigraphic Historical Archaeological Evidence in the Upper Guil Valley, France

article

Regioselectivity and stereoselectivity of dioxygenase catalysed cis-dihydroxylation of mono- and tri-cyclic azaarene substrates.

scientific article

Revealing the global importance of isoprene metabolism by marine bacteria

scientific article published on 17 July 2017

Shallow water methane-derived authigenic carbonate mounds at the Codling Fault Zone, western Irish Sea ⬇️

scholarly article by Shane S. O'Reilly published in November 2014

Spectroscopic Characterisation of the Naphthalene Dioxygenase from Rhodococcus sp. Strain NCIMB12038

scientific article published on 11 July 2019

Stereoselective reductase-catalysed deoxygenation of sulfoxides in aerobic and anaerobic bacteria.

scientific article published on 16 January 2004

Structure and increased thermostability of Rhodococcus sp. naphthalene 1,2-dioxygenase.

scientific article

Structure, stereochemistry and synthesis of enantiopure cyclohexenone cis-diol bacterial metabolites derived from phenols

scientific article published on 19 March 2012

Tandem enzyme-catalysed oxidations of alkyl phenyl sulfides and alkyl benzenes: enantiocomplementary routes to chiral phenols.

scientific article published in September 2002

The distribution of novel bacterial laccases in alpine paleosols is directly related to soil stratigraphy

scientific article published on 18 March 2019

The occurrence of PAHs and faecal sterols in Dublin Bay and their influence on sedimentary microbial communities

scientific article published on 05 March 2016

Toluene Dioxygenase-Catalyzed Synthesis and Reactions of cis-Diol Metabolites Derived from 2- and 3-Methoxyphenols

scientific article published on 23 March 2015

Toluene dioxygenase-catalyzed cis-dihydroxylation of benzo[b]thiophenes and benzo[b]furans: synthesis of benzo[b]thiophene 2,3-oxide

scientific article published on 01 September 2012

Tracking the fate of microbially sequestered carbon dioxide in soil organic matter.

scientific article published on 7 May 2013

Weathering rinds as mirror images of palaeosols: examples from the Western Alps with correlation to Antarctica and Mars

scholarly article

Web-type evolution of rhodococcus gene clusters associated with utilization of naphthalene.

scientific article published on April 2005

cis-Dihydrodiol, arene oxide and phenol metabolites of dictamnine: key intermediates in the biodegradation and biosynthesis of furoquinoline alkaloids.

scientific article published on 11 July 2005

syn-Benzene dioxides: chemoenzymatic synthesis from 2,3-cis-dihydrodiol derivatives of monosubstituted benzenes and their application in the synthesis of regioisomeric 1,2- and 3,4-cis-dihydrodiols and 1,4-dioxocins

scientific article published on 12 June 2007

List of works by Christopher C.R. Allen

A Depth Resolved Insight into Benzoyl CoA Reductase and Benzoate Dioxygenase Gene Copy Numbers within a Marine Sediment Associated with Methane Seepage

A Microbial Link to Weathering of Postglacial Rocks and Sediments, Mount Viso Area, Western Alps, Demonstrated through Analysis of a Soil/Paleosol Bio/Chronosequence

A bacterial enrichment study and overview of the extractable lipids from paleosols in the Dry Valleys, Antarctica: implications for future Mars reconnaissance

Abundance and diversity of sedimentary bacterial communities in a coastal productive setting in the Western Irish Sea

Aerobic metabolism of 4-hydroxybenzoic acid in Archaea via an unusual pathway involving an intramolecular migration (NIH shift).

An inventory of potentially habitable environments on Mars: Geological and biological perspectives

Analysis of transduction in wastewater bacterial populations by targeting the phage-derived 16S rRNA gene sequences

Analysis of viral and bacterial communities in groundwater associated with contaminated land

Application of ω-Transaminases in the Pharmaceutical Industry.

Azaarene cis-dihydrodiol-derived 2,2'-bipyridine ligands for asymmetric allylic oxidation and cyclopropanation.

Bacterial dioxygenase- and monooxygenase-catalysed sulfoxidation of benzo[b]thiophenes

Biodegradation and Rhodococcus--masters of catabolic versatility.

Biodegradation by members of the genus Rhodococcus: biochemistry, physiology, and genetic adaptation

Biomarkers reveal the effects of hydrography on the sources and fate of marine and terrestrial organic matter in the western Irish Sea

Biostratigraphic Evidence Relating to the Age-Old Question of Hannibal's Invasion of Italy, I: History and Geological Reconstruction

Biostratigraphic Evidence Relating to the Age-Old Question of Hannibal's Invasion of Italy, II: Chemical Biomarkers and Microbial Signatures

Characterisation of a solvent-tolerant haloarchaeal (R)-selective transaminase isolated from a Triassic period salt mine

Characterization of a novel ω-transaminase from a Triassic salt mine metagenome

Chemoenzymatic Synthesis of (-)-Ribisins A and B from Dibenzo[b,d]furan

Chemoenzymatic formal synthesis of (-)- and (+)-epibatidine

Chemoenzymatic synthesis of a mixed phosphine-phosphine oxide catalyst and its application to asymmetric allylation of aldehydes and hydrogenation of alkenes.

Chemoenzymatic synthesis of carbasugars (+)-pericosines A-C from diverse aromatic cis-dihydrodiol precursors

Chemoenzymatic synthesis of carbasugars from iodobenzene.

Chemoenzymatic synthesis of chiral 2,2'-bipyridine ligands and their N-oxide derivatives: applications in the asymmetric aminolysis of epoxides and asymmetric allylation of aldehydes

Chemoenzymatic synthesis of enantiopure hydroxy sulfoxides derived from substituted arenes.

Chemoenzymatic synthesis of monocyclic arene oxides and arene hydrates from substituted benzene substrates.

Chemoenzymatic synthesis of the carbasugars carba-beta-L-galactopyranose, carba-beta-L-talopyranose and carba-alpha-L-talopyranose from methyl benzoate

Chemoenzymatic synthesis of the trans-dihydrodiol isomers of monosubstituted benzenes via anti-benzene dioxides.

Chemoenzymatic synthesis of trans-dihydrodiol derivatives of monosubstituted benzenes from the corresponding cis-dihydrodiol isomers.

Coleoptera and microbe biomass in Antarctic Dry Valley paleosols adjacent to the Inland Ice: Implications for Mars

Cosmic Airburst on Developing Allerød Substrates (Soils) in the Western Alps, Mt. Viso Area ⬇️

Crystallization and preliminary X-ray diffraction analysis of naphthalene dioxygenase from Rhodococcus sp. strain NCIMB 12038.

Dioxygenase-catalysed cis-dihydroxylation of meta-substituted phenols to yield cyclohexenone cis-diol and derived enantiopure cis-triol metabolites

Dioxygenase-catalysed dihydroxylation of arene cis-dihydrodiols and acetonide derivatives: a new approach to the synthesis of enantiopure tetraoxygenated bioproducts from arenes

Dioxygenase-catalysed oxidation of alkylaryl sulfides: sulfoxidation versus cis-dihydrodiol formation.

Draft Genome Sequence of Rhodococcus sp. Strain NCIMB 12038, a Naphthalene-Degrading Bacterium

Draft Genome Sequence of the Predatory Marine Bacterium Halobacteriovorax sp. Strain JY17.

Draft Genome Sequences of Pseudomonas putida UV4 and UV4/95, Toluene Dioxygenase-Expressing Producers of cis-1,2-Dihydrodiols.

Effect of soil horizon stratigraphy on the microbial ecology of alpine paleosols

Enantiopurity and absolute configuration determination of arene cis-dihydrodiol metabolites and derivatives using chiral boronic acids.

Engineering Peptides to Catalyze and Control Stabilization of Gas Hydrates: Learning From Nature

Evidence for cosmic airburst in the Western Alps archived in Late Glacial paleosols

Extent and variation of phage-borne bacterial 16S rRNA gene sequences in wastewater environments.

Genomes of "phiKMV-like viruses" of Pseudomonas aeruginosa contain localized single-strand interruptions.

Geophysical and geochemical survey of a large marine pockmark on the Malin Shelf, Ireland

Isolation of Rhodococcus rhodochrous NCIMB13064 derivatives with new biodegradative abilities

Large perturbations in CO2 flux and subsequent chemosynthesis are induced in agricultural soil by the addition of elemental sulfur.

Late Pleistocene Glacial-Paleosol-cosmic record of the Viso Massif—France and Italy: New evidence in support of the Younger Dryas boundary (12.8 ka)

Magnetic-Field Manipulation of Naturally Occurring Microbial Chiral Peptides to Regulate Gas-Hydrate Formation

Magnetic-field effects on methane-hydrate kinetics and potential geophysical implications: Insights from non-equilibrium molecular dynamics

Metagenomic Characterisation of the Viral Community of Lough Neagh, the Largest Freshwater Lake in Ireland.

Microbial ecology and geoelectric responses across a groundwater plume

Mineralogy, chemistry and biological contingents of an early-middle Miocene Antarctic paleosol and its relevance as a Martian analogue

New families of enantiopure cyclohexenone cis-diol, o-quinol dimer and hydrate metabolites from dioxygenase-catalysed dihydroxylation of phenols.

Pf16 and phiPMW: Expanding the realm of Pseudomonas putida bacteriophages.

Raman Deuterium Isotope Probing Reveals Microbial Metabolism at the Single-Cell Level.

Rational Design of a (S)-Selective-Transaminase for Asymmetric Synthesis of (1S)-1-(1,1′-biphenyl-2-yl)ethanamine

Reassessment of the Microbial Role in Mn-Fe Nodule Genesis in Andean Paleosols

Recent developments in the analysis of the black mat layer and cosmic impact at 12.8 ka

Reconnaissance of the Hannibalic Route in the Upper Po Valley, Italy: Correlation with Biostratigraphic Historical Archaeological Evidence in the Upper Guil Valley, France

Regioselectivity and stereoselectivity of dioxygenase catalysed cis-dihydroxylation of mono- and tri-cyclic azaarene substrates.

Revealing the global importance of isoprene metabolism by marine bacteria

Shallow water methane-derived authigenic carbonate mounds at the Codling Fault Zone, western Irish Sea ⬇️

Spectroscopic Characterisation of the Naphthalene Dioxygenase from Rhodococcus sp. Strain NCIMB12038

Stereoselective reductase-catalysed deoxygenation of sulfoxides in aerobic and anaerobic bacteria.

Structure and increased thermostability of Rhodococcus sp. naphthalene 1,2-dioxygenase.

Structure, stereochemistry and synthesis of enantiopure cyclohexenone cis-diol bacterial metabolites derived from phenols

Tandem enzyme-catalysed oxidations of alkyl phenyl sulfides and alkyl benzenes: enantiocomplementary routes to chiral phenols.

The distribution of novel bacterial laccases in alpine paleosols is directly related to soil stratigraphy

The occurrence of PAHs and faecal sterols in Dublin Bay and their influence on sedimentary microbial communities

Toluene Dioxygenase-Catalyzed Synthesis and Reactions of cis-Diol Metabolites Derived from 2- and 3-Methoxyphenols

Toluene dioxygenase-catalyzed cis-dihydroxylation of benzo[b]thiophenes and benzo[b]furans: synthesis of benzo[b]thiophene 2,3-oxide

Tracking the fate of microbially sequestered carbon dioxide in soil organic matter.

Weathering rinds as mirror images of palaeosols: examples from the Western Alps with correlation to Antarctica and Mars

Web-type evolution of rhodococcus gene clusters associated with utilization of naphthalene.

cis-Dihydrodiol, arene oxide and phenol metabolites of dictamnine: key intermediates in the biodegradation and biosynthesis of furoquinoline alkaloids.

syn-Benzene dioxides: chemoenzymatic synthesis from 2,3-cis-dihydrodiol derivatives of monosubstituted benzenes and their application in the synthesis of regioisomeric 1,2- and 3,4-cis-dihydrodiols and 1,4-dioxocins