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List of works by Claudio L Afonso

A 24-Year-Old Sample Contributes the Complete Genome Sequence of Fowl Aviadenovirus D from the United States

scientific article published on 07 January 2021

A 25-Year-Old Sample Contributes the Complete Genome Sequence of Avian Coronavirus Vaccine Strain ArkDPI, Reisolated from Commercial Broilers in the United States

scientific article published on 27 February 2020

A retrospective study of Newcastle disease in Kenya

scientific article published on 10 September 2019

A robust and cost-effective approach to sequence and analyze complete genomes of small RNA viruses.

scientific article

Analysis of the Genome of the Sexually Transmitted Insect Virus Helicoverpa zea Nudivirus 2 ⬇️

scientific article published on January 6, 2012

Antigenic differences among Newcastle disease virus strains of different genotypes used in vaccine formulation affect viral shedding after a virulent challenge

scientific article

Assessment of contemporary genetic diversity and inter-taxa/inter-region exchange of avian paramyxovirus serotype 1 in wild birds sampled in North America

scientific article published on 03 March 2017

Avian paramyxovirus serotype 1 (Newcastle disease virus), avian influenza virus, and Salmonella spp. in mute swans (Cygnus olor) in the Great Lakes region and Atlantic Coast of the United States

scientific article published on March 2014

Biological and Phylogenetic Characterization of a Genotype VII Newcastle Disease Virus from Venezuela: Efficacy of Field Vaccination ⬇️

scientific article published on January 11, 2012

Biological and phylogenetic characterization of pigeon paramyxovirus serotype 1 circulating in wild North American pigeons and doves

scientific article published on 20 August 2008

Capturing enveloped viruses on affinity grids for downstream cryo-electron microscopy applications

scientific article published on 26 November 2013

Characterization of Live LaSota Vaccine Strain–Induced Protection in Chickens upon Early Challenge with a Virulent Newcastle Disease Virus of Heterologous Genotype

scientific article published on September 1, 2012

Characterization of Newcastle Disease Viruses Isolated from Cormorant and Gull Species in the United States in 2010 ⬇️

scientific article published on March 1, 2012

Characterization of class I Newcastle disease virus isolates from Hong Kong live bird markets and detection using real-time reverse transcription-PCR.

scientific article published on 7 February 2007

Complete Coding Sequences of Three Chicken Parvovirus Isolates from the United States

scientific article published on 24 September 2020

Complete Genome Sequence of Avian Coronavirus Strain GA08 (GI-27 Lineage)

scientific article published on 27 February 2020

Complete Genome Sequence of Genotype VI Newcastle Disease Viruses Isolated from Pigeons in Pakistan

scientific article published on 18 August 2016

Complete Genome Sequence of a Genotype XVII Newcastle Disease Virus, Isolated from an Apparently Healthy Domestic Duck in Nigeria

scientific article published on 4 February 2016

Complete Genome Sequence of a Recent Panzootic Virulent Newcastle Disease Virus from Pakistan

scientific article published on 18 June 2015

Complete Genome Sequence of a Virulent Newcastle Disease Virus Strain Isolated from a Clinically Healthy Duck (Anas platyrhynchos domesticus) in Pakistan

scientific article published on 28 July 2016

Complete Genome Sequence of an Avian Paramyxovirus Representative of Putative New Serotype 13.

scientific article published on 28 July 2016

Complete Genome Sequences of 11 Newcastle Disease Virus Isolates of Subgenotype VII.2 from Indonesia

scientific article published on 30 January 2020

Complete Genome Sequences of Four Avian Paramyxoviruses of Serotype 10 Isolated from Rockhopper Penguins on the Falkland Islands

scientific article

Complete genome and clinicopathological characterization of a virulent Newcastle disease virus isolate from South America

scientific article published on 30 November 2011

Complete genome sequences of new emerging newcastle disease virus strains isolated from china

scientific article published on January 2013

Complete genome sequencing of a novel newcastle disease virus isolate circulating in layer chickens in the Dominican Republic.

scientific article

Delayed Newcastle disease virus replication using RNA interference to target the nucleoprotein

scientific article published on 4 June 2015

Derivation of chicken induced pluripotent stem cells tolerant to Newcastle disease virus-induced lysis through multiple rounds of infection

scientific article published on 05 December 2016

Detection and isolation of exotic Newcastle disease virus from field-collected flies

scientific article published in September 2007

Detection of Fowlpox virus carrying distinct genome segments of Reticuloendotheliosis virus

article

Detection of a broad range of class I and II Newcastle disease viruses using a multiplex real-time reverse transcription polymerase chain reaction assay.

scientific article

Development of an improved vaccine evaluation protocol to compare the efficacy of Newcastle disease vaccines

scientific article published on 12 December 2014

Development, characterization and optimization of a new suspension chicken-induced pluripotent cell line for the production of Newcastle disease vaccine.

scientific article published on 13 November 2015

Differential host gene expression in cells infected with highly pathogenic H5N1 avian influenza viruses

scientific article published on 03 June 2008

Draft Genome Sequences of Five Novel Ochrobactrum spp. Isolated from Different Avian Hosts in Nigeria

scientific article published on 15 March 2018

Draft Genome Sequences of Three Ochrobactrum spp. Isolated from Different Avian Hosts in Pakistan.

scientific article

Effect of Infection with a Mesogenic Strain of Newcastle Disease Virus on Infection with Highly Pathogenic Avian Influenza Virus in Chickens

scientific article published on May 2016

Effect of age on the pathogenesis and innate immune responses in Pekin ducks infected with different H5N1 highly pathogenic avian influenza viruses ⬇️

scientific article published on May 15, 2012

Effect of probe-site mismatches on detection of virulent Newcastle disease viruses using a fusion-gene real-time reverse transcription polymerase chain reaction test.

scientific article published in November 2006

Effects of Chicken Interferon Gamma on Newcastle Disease Virus Vaccine Immunogenicity.

scientific article

Effects of Newcastle disease virus vaccine antibodies on the shedding and transmission of challenge viruses

scientific article published on 21 June 2013

Enhanced phylogenetic resolution of Newcastle disease outbreaks using complete viral genome sequences from formalin-fixed paraffin-embedded tissue samples

scientific article published on 14 May 2019

Epidemiology, control, and prevention of Newcastle disease in endemic regions: Latin America.

scientific article published on 15 March 2019

Evaluation of the transcriptional status of host cytokines and viral genes in the trachea of vaccinated and non-vaccinated chickens after challenge with the infectious laryngotracheitis virus

scientific article

Evidence for a new avian paramyxovirus serotype 10 detected in rockhopper penguins from the Falkland Islands

scientific article

Evolutionary changes affecting rapid identification of 2008 Newcastle disease viruses isolated from double-crested cormorants

scientific article

Evolutionary dynamics of Newcastle disease virus

scientific article

Experimental Infection and Transmission of Newcastle Disease Vaccine Virus in Four Wild Passerines

scientific article published on 01 September 2019

Experimental co-infections of domestic ducks with a virulent Newcastle disease virus and low or highly pathogenic avian influenza viruses

scientific article

Expression of chicken interleukin-2 by a highly virulent strain of Newcastle disease virus leads to decreased systemic viral load but does not significantly affect mortality in chickens.

scientific article published on 8 August 2015

Expression of interferon gamma by a highly virulent strain of Newcastle disease virus decreases its pathogenicity in chickens.

scientific article published on 25 May 2013

First Complete Genome Sequence of Currently Circulating Infectious Bronchitis Virus Strain DMV/1639 of the GI-17 Lineage

scientific article published on 22 August 2019

First Complete Genome Sequence of a Subgenotype Vd Newcastle Disease Virus Isolate

scientific article published on 03 July 2019

First Genome Sequence of Newcastle Disease Virus of Genotype VIIi from Jordan

scientific article published on 13 December 2018

Genetic characterization and pathogenesis of the first H9N2 low pathogenic avian influenza viruses isolated from chickens in Kenyan live bird markets

scientific article published on 18 October 2019

Genetic diversity and mutation of avian paramyxovirus serotype 1 (Newcastle disease virus) in wild birds and evidence for intercontinental spread

scientific article published on 27 June 2013

Genetic diversity of avian paramyxovirus type 1: Proposal for a unified nomenclature and classification system of Newcastle disease virus genotypes ⬇️

scientific article published on August 7, 2012

Genetic stability of a Newcastle disease virus vectored infectious laryngotracheitis virus vaccine after serial passages in chicken embryos

scientific article published on 05 November 2019

Genome Sequence Variations of Infectious Bronchitis Virus Serotypes From Commercial Chickens in Mexico

scientific article published on 12 July 2022

Genome of invertebrate iridescent virus type 3 (mosquito iridescent virus).

scientific article published on September 2006

Genome-wide analysis reveals class and gene specific codon usage adaptation in avian paramyxoviruses 1.

scientific article published on 9 February 2017

Genomic comparison of Newcastle disease viruses isolated in Nigeria between 2002 and 2015 reveals circulation of highly diverse genotypes and spillover into wild birds

scientific article published on 23 May 2019

Genomic comparison of the complete coding and intergenic regions of the VG/GA Newcastle disease virus and its respirotropic clone 5.

scientific article published on 24 June 2008

Global phylodynamic analysis of avian paramyxovirus-1 provides evidence of inter-host transmission and intercontinental spatial diffusion

article

H9N2 low pathogenic avian influenza in Pakistan (2012-2015).

scientific article published on 27 June 2016

Highly divergent virulent isolates of Newcastle disease virus from the Dominican Republic are members of a new genotype that may have evolved unnoticed for over 2 decades.

scientific article published on 28 November 2012

Identification and Complete Genome Sequence Analysis of a Genotype XIV Newcastle Disease Virus from Nigeria.

scientific article published on 28 January 2016

Identification of Avian Paramyxovirus Serotype-1 in Wild Birds in the USA.

scientific article

Identification of new sub-genotypes of virulent Newcastle disease virus with potential panzootic features

scientific article published on 20 November 2014

Immune responses of poultry to Newcastle disease virus

scientific article

In vivo transcriptional cytokine responses and association with clinical and pathological outcomes in chickens infected with different Newcastle disease virus isolates using formalin-fixed paraffin-embedded samples.

scientific article published on 9 March 2011

International Biological Engagement Programs Facilitate Newcastle Disease Epidemiological Studies

scientific article

Intracellular fixation buffer inactivates Newcastle disease virus in chicken allantoic fluid, macrophages and splenocytes.

scientific article published on 29 September 2017

Isolation and genetic characterization of avian influenza viruses and a Newcastle disease virus from wild birds in Barbados: 2003-2004.

scientific article published in September 2007

MinION sequencing to genotype US strains of infectious laryngotracheitis virus

scientific article published on 11 March 2019

Molecular epidemiology of Newcastle disease in Mexico and the potential spillover of viruses from poultry into wild bird species.

scientific article published on 14 June 2013

Neurological lesions in chickens experimentally infected with virulent Newcastle disease virus isolates

scientific article published on April 2011

Newcastle Disease Viruses Causing Recent Outbreaks Worldwide Show Unexpectedly High Genetic Similarity to Historical Virulent Isolates from the 1940s.

scientific article published on 17 February 2016

Newcastle disease vaccines-A solved problem or a continuous challenge?

scientific article published on 16 December 2016

Newcastle disease virus fusion and haemagglutinin-neuraminidase proteins contribute to its macrophage host range

scientific article published on 20 February 2013

Newcastle disease: evolution of genotypes and the related diagnostic challenges

scientific article published on 30 September 2009

Not so fast on recombination analysis of Newcastle disease virus

scientific article published on September 2008

Pathogenicity and transmission of virulent Newcastle disease virus from the 2018-2019 California outbreak and related viruses in young and adult chickens

scientific article published on 22 March 2019

Pathogenicity evaluation of different Newcastle disease virus chimeras in 4-week-old chickens.

scientific article published on 8 July 2010

Phylogenetic and biological characterization of Newcastle disease virus isolates from Pakistan.

scientific article published on 17 March 2010

Phylogenetic assessment reveals continuous evolution and circulation of pigeon-derived virulent avian avulaviruses 1 in Eastern Europe, Asia, and Africa.

scientific article published on 26 September 2017

Phylogenetic diversity among low-virulence newcastle disease viruses from waterfowl and shorebirds and comparison of genotype distributions to those of poultry-origin isolates

scientific article

Presence of Newcastle disease viruses of sub-genotypes Vc and VIn in backyard chickens and in apparently healthy wild birds from Mexico in 2017

scientific article published on 12 April 2019

Presence of Vaccine-Derived Newcastle Disease Viruses in Wild Birds.

scientific article

Presence of virulent Newcastle disease virus in vaccinated chickens in farms in Pakistan

scientific article published on 18 February 2015

Previous infection with virulent strains of Newcastle disease virus reduces highly pathogenic avian influenza virus replication, disease, and mortality in chickens

scientific article

Rapid evolution of Mexican H7N3 highly pathogenic avian influenza viruses in poultry

scientific article published on 12 September 2019

Rapid virulence prediction and identification of Newcastle disease virus genotypes using third-generation sequencing

scientific article published on 22 November 2018

Rapid, multiplexed, whole genome and plasmid sequencing of foodborne pathogens using long-read nanopore technology

scientific article published on 08 November 2019

Repeated Challenge with Virulent Newcastle Disease Virus Does Not Decrease the Efficacy of Vaccines

scientific article published on June 2017

Repeated isolation of virulent Newcastle disease viruses in poultry and captive non-poultry avian species in Pakistan from 2011 to 2016.

scientific article

Repeated isolation of virulent Newcastle disease viruses of sub-genotype VIId from backyard chickens in Bulgaria and Ukraine between 2002 and 2013.

scientific article published on 31 August 2016

Reply to "May Newly Defined Subgenotypes Va and Vb of Newcastle Disease Virus in Poultry Be Considered Two Different Genotypes?".

scientific article published on August 2016

Reverse Genetics of Newcastle Disease Virus

scientific article published on January 2017

Runting and Stunting Syndrome in Broiler Chickens: Histopathology and Association With a Novel Picornavirus

scientific article published on 07 December 2020

Separate evolution of virulent newcastle disease viruses from Mexico and Central America.

scientific article published on 12 February 2014

Sequencing of avian influenza virus genomes following random amplification

scientific article

Taxonomy of the order Mononegavirales: update 2016

scientific article published in August 2016

Temporal, geographic, and host distribution of avian paramyxovirus 1 (Newcastle disease virus).

scientific article published on 12 January 2016

The VG/GA strain of Newcastle disease virus: mucosal immunity, protection against lethal challenge and molecular analysis

scientific article published in June 2008

Tropism of Newcastle disease virus strains for chicken neurons, astrocytes, oligodendrocytes, and microglia

scientific article published on 04 September 2019

Unique ligation properties of eukaryotic NAD+-dependent DNA ligase from Melanoplus sanguinipes entomopoxvirus

scientific article published on September 2004

Updated unified phylogenetic classification system and revised nomenclature for Newcastle disease virus

scientific article published on 11 June 2019

Viral genome sequencing by random priming methods.

scientific article

Virulent Newcastle disease virus elicits a strong innate immune response in chickens.

scientific article

Virulent Newcastle disease viruses from chicken origin are more pathogenic and transmissible to chickens than viruses normally maintained in wild birds

scientific article published on 05 June 2019

Virus interference between H7N2 low pathogenic avian influenza virus and lentogenic Newcastle disease virus in experimental co-infections in chickens and turkeys.

scientific article published on 06 January 2014

Whole-genome sequencing of genotype VI Newcastle disease viruses from formalin-fixed paraffin-embedded tissues from wild pigeons reveals continuous evolution and previously unrecognized genetic diversity in the U.S.

scientific article published on 12 January 2018

Wild bird surveillance for avian paramyxoviruses in the Azov-black sea region of Ukraine (2006 to 2011) reveals epidemiological connections with Europe and Africa

scientific article

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