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List of works by Daniel F.R. Cleary

'Blue Carbon' and Nutrient Stocks of Salt Marshes at a Temperate Coastal Lagoon (Ria de Aveiro, Portugal).

scientific article published on 25 January 2017

A comparison of microeukaryote communities inhabiting sponges and seawater in a Taiwanese coral reef system

scientific article published in 2019

A comparison of prokaryote communities inhabiting sponges, bacterial mats, sediment and seawater in Southeast Asian coral reefs

scientific article published on 01 December 2019

A global database for metacommunity ecology, integrating species, traits, environment and space

scientific article published on 08 January 2020

An analysis of sponge diversity and distribution at three taxonomic levels in the Thousand Islands/Jakarta Bay reef complex, West-Java, Indonesia

scholarly article by Nicole J. de Voogd & Daniel F. R. Cleary published June 2008 in Marine Ecology

An examination of scale of assessment, logging and ENSO-induced fires on butterfly diversity in Borneo ⬇️

scientific article published on March 4, 2003

Aquaponics using a fish farm effluent shifts bacterial communities profile in halophytes rhizosphere and endosphere

scientific article published on 22 June 2020

Assessing the bacterial communities of sponges inhabiting the remote western Indian Ocean island of Mayotte

scientific article published in 2018

Assessing the use of butterflies as indicators of logging in Borneo at three taxonomic levels

scientific article published on April 2004

Assessing variation in bacterial composition between the rhizospheres of two mangrove tree species

article

Assessment of variation in bacterial composition among microhabitats in a mangrove environment using DGGE fingerprints and barcoded pyrosequencing.

scientific article

Associations of Bird Species Richness and Community Composition with Local and Landscape-scale Environmental Factors in Borneo

scientific article published in 2005

Author Correction: A global database for metacommunity ecology, integrating species, traits, environment and space

scientific article published on 02 March 2020

Author Correction: Aquaponics using a fish farm effluent shifts bacterial communities profile in halophytes rhizosphere and endosphere

scientific article published on 18 November 2020

Bacterial Communities Inhabiting the Sponge Biemna fortis, Sediment and Water in Marine Lakes and the Open Sea.

scientific article

Bacterial and archaeal communities inhabiting mussels, sediment and water in Indonesian anchialine lakes.

scientific article published on 12 October 2017

Bacterial community composition and predicted functional ecology of sponges, sediment and seawater from the thousand islands reef complex, West Java, Indonesia.

scientific article published on 26 February 2015

Bacterial composition and putative functions associated with sponges, sediment and seawater from the Tioman coral reef system, Peninsular Malaysia

scientific article published on 10 March 2021

Beta diversity of tropical marine benthic assemblages in the Spermonde Archipelago, Indonesia

scholarly article by Leontine E. Becking et al published March 2006 in Marine Ecology

Biodiversity pattern of subtidal sponges (Porifera: Demospongiae) in the Penghu Archipelago (Pescadores), Taiwan

scientific article published on 05 March 2015

Bird species and traits associated with logged and unlogged forest in Borneo

scientific article

Burning and logging differentially affect endemic vs. widely distributed butterfly species in Borneo

scientific article published on 06 July 2006

Butterfly species richness and community composition in forests affected by ENSO-induced burning and habitat isolation in Borneo

scientific article published on 09 July 2004

Butterfly, spider, and plant communities in different land-use types in Sardinia, Italy

article

Changes in rain forest butterfly diversity following major ENSO-induced fires in Borneo

scientific article published in 2004

Characterization of bacterioplankton communities from a hatchery recirculating aquaculture system (RAS) for juvenile sole (Solea senegalensis) production

scientific article published in PLoS ONE

Characterization of putative circular plasmids in sponge-associated bacterial communities using a selective multiply-primed rolling circle amplification

scientific article published on 31 August 2020

Comparison of archaeal and bacterial communities in two sponge species and seawater from an Indonesian coral reef environment

scientific article

Composition and Predictive Functional Analysis of Bacterial Communities in Seawater, Sediment and Sponges in the Spermonde Archipelago, Indonesia.

scientific article published on 14 June 2015

Composition and diversity of prokaryotic communities sampled from sponges and soft corals in Maldivian waters

scientific article published on 08 March 2021

Composition and predicted functional ecology of mussel-associated bacteria in Indonesian marine lakes

scientific article published on 7 January 2015

Composition of Archaea in seawater, sediment, and sponges in the Kepulauan Seribu reef system, Indonesia.

scientific article published on 30 January 2014

Compositional variation between high and low prokaryotic diversity coral reef biotopes translates to different predicted metagenomic gene content

scientific article published on 04 December 2019

Contrasting habitats occupied by sibling spider crabs Maja squinado and Maja brachydactyla (Brachyura, Majidae) can influence the biochemical variability displayed by newly hatched larvae

Denaturing gradient gel electrophoresis and barcoded pyrosequencing reveal unprecedented archaeal diversity in mangrove sediment and rhizosphere samples

scientific article

Development and validation of an experimental life support system for assessing the effects of global climate change and environmental contamination on estuarine and coastal marine benthic communities.

scientific article

Diversity and community composition of butterflies and odonates in an ENSO-induced fire affected habitat mosaic: a case study from East Kalimantan, Indonesia

scientific article published on 22 March 2004

Ecological correlates of species differences in the Lake Tanganyika crab radiation

Ecological correlates of species differences in the Lake Tanganyika crab radiation

article

Ecology and conservation status of endemic freshwater crabs in Lake Tanganyika, Africa

scientific article published in 2008

Effect of spatio-temporal shifts in salinity combined with other environmental variables on the ecological processes provided by Zostera noltei meadows.

scientific article

Globally intertwined evolutionary history of giant barrel sponges

Habitat- and host-related variation in sponge bacterial symbiont communities in Indonesian waters.

scientific article

Halophyte plant colonization as a driver of the composition of bacterial communities in salt marshes chronically exposed to oil hydrocarbons.

scientific article

Impact of Mangrove Roots on Bacterial Composition

article

Impact of sampling depth and plant species on local environmental conditions, microbiological parameters and bacterial composition in a mercury contaminated salt marsh

article

Independent and interactive effects of reduced seawater pH and oil contamination on subsurface sediment bacterial communities

scientific article published on 22 September 2018

Integrated analysis of bacterial and microeukaryotic communities from differentially active mud volcanoes in the Gulf of Cadiz

scientific article published on 20 October 2016

Interactive effects of global climate change and pollution on marine microbes: the way ahead

scientific article (publication date: June 2013)

Interannual variability in the biochemical composition of newly hatched larvae of the spider crabMaja brachydactyla(Decapoda, Majidae)

article

Jellyfish-associated bacterial communities and bacterioplankton in Indonesian Marine lakes

scientific article

Linking fish species traits to environmental conditions in the Jakarta Bay-Pulau Seribu coral reef system.

scientific article published on 26 June 2017

Lock, stock and two different barrels: comparing the genetic composition of morphotypes of the indo-pacific sponge Xestospongia testudinaria

scientific article

Mangrove bacterial richness ⬇️

scientific article published on July 1, 2011

Microcosm evaluation of the impact of oil contamination and chemical dispersant addition on bacterial communities and sediment remediation of an estuarine port environment

scientific article published on 20 May 2019

Molecular analysis of bacterial communities and detection of potential pathogens in a recirculating aquaculture system for Scophthalmus maximus and Solea senegalensis

scientific article

Molecular analysis of skin bacterial assemblages from codfish and pollock after dry-salted fish production.

scientific article published on May 2015

Multitaxon activity profiling reveals differential microbial response to reduced seawater pH and oil pollution

scientific article

Parallel responses of species and genetic diversity to El Niño Southern Oscillation-induced environmental destruction.

scientific article published in March 2006

Polycyclic aromatic hydrocarbons in deep sea sediments: Microbe-pollutant interactions in a remote environment

scientific article

Prokaryote Communities Inhabiting Endemic and Newly Discovered Sponges and Octocorals from the Red Sea

scientific article published on 14 January 2020

Prokaryote Composition and Predicted Metagenomic Content of Two Cinachyrella Morphospecies and Water from West Papuan Marine Lakes.

scientific article

Prokaryotic communities of Indo-Pacific giant barrel sponges are more strongly influenced by geography than host phylogeny

scientific article published on 01 December 2018

Providing a common diet to different marine decapods does not standardize the fatty acid profiles of their larvae: a warning sign for experimentation using invertebrate larvae produced in captivity

scientific article published in 2010

Ragworm fatty acid profiles reveals habitat and trophic interactions with halophytes and with mercury

scientific article published on 31 August 2012

Range-restricted, specialist Bornean butterflies are less likely to recover from ENSO-induced disturbance.

scientific article

Relating species traits to environmental variables in Indonesian coral reef sponge assemblages

article published in 2007

Relating variation in species composition to environmental variables: a multi-taxon study in an Indonesian coral reef complex

article

Richness and composition of sediment bacterial assemblages in an Atlantic port environment

scientific article

Seasonal patterns of bacterioplankton composition in a semi-intensive European seabass ( Dicentrarchus labrax ) aquaculture system

article

Sediment depth and habitat as predictors of the diversity and composition of sediment bacterial communities in an inter-tidal estuarine environment

article

Short-term impact of 1997/1998 ENSO-induced disturbance on abundance and genetic variation in a tropical butterfly.

scientific article

Short-term impact of disturbance on genetic diversity and structure of Indonesian populations of the butterfly Drupadia theda in East Kalimantan.

scientific article

Sponge Prokaryote Communities in Taiwanese Coral Reef and Shallow Hydrothermal Vent Ecosystems

scientific article published on 11 July 2017

Sponges and their prokaryotic communities sampled from a remote karst ecosystem

Taking root: enduring effect of rhizosphere bacterial colonization in mangroves

scientific article

Temporal dynamics of sediment bacterial communities in monospecific stands of Juncus maritimus and Spartina maritima

scientific article published on 7 April 2016

The PREDICTS database: a global database of how local terrestrial biodiversity responds to human impacts ⬇️

scientific article

The database of the PREDICTS (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems) project ⬇️

scientific article

The effect of natural disturbances on forest biodiversity: an ecological synthesis

scientific article published in 2022

The putative functional ecology and distribution of archaeal communities in sponges, sediment and seawater in a coral reef environment.

scientific article

The sponge microbiome within the greater coral reef microbial metacommunity

scientific article published on 09 April 2019

The sudden death of a coral reef

scientific article

Unraveling the interactive effects of climate change and oil contamination on laboratory-simulated estuarine benthic communities.

scientific article

Variation in sponge composition among Singapore reefs ⬇️

scientific article published in 2013

Variation in the composition and diversity of ground-layer herbs and shrubs in unburnt and burnt landscapes

scientific article published in 2018

Variation in the composition of corals, fishes, sponges, echinoderms, ascidians, molluscs, foraminifera and macroalgae across a pronounced in-to-offshore environmental gradient in the Jakarta Bay-Thousand Islands coral reef complex

scientific article

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