List of works by Jeffrey Royle

A Bayesian state-space formulation of dynamic occupancy models.

scientific article published in July 2007

A framework for inference about carnivore density from unstructured spatial sampling of scat using detector dogs

article

A hierarchical model combining distance sampling and time removal to estimate detection probability during avian point counts

article

A hierarchical model for estimating density in camera-trap studies

article

A hierarchical model for spatial capture-recapture data.

scientific article

A hierarchical model for spatial capture-recapture data: comment

scientific article

A hierarchical nest survival model integrating incomplete temporally varying covariates.

scientific article published on 10 October 2013

A multistate dynamic site occupancy model for spatially aggregated sessile communities

scientific article published in 2016

Accounting for imperfect detection of groups and individuals when estimating abundance

scientific article published on 8 August 2017

Accounting for non-independent detection when estimating abundance of organisms with a Bayesian approach

article

Acoustic space occupancy: Combining ecoacoustics and lidar to model biodiversity variation and detection bias across heterogeneous landscapes

scientific article published in June 2020

Advanced Hierarchical Distance Sampling

scientific article published in 2016

An integrated population model for bird monitoring in North America.

scientific article published on 30 December 2016

An open-population hierarchical distance sampling model

scientific article published on February 2015

Analysis of Multinomial Models With Unknown Index Using Data Augmentation

article

Analysis of capture-recapture models with individual covariates using data augmentation.

scientific article

Assessing hypotheses about nesting site occupancy dynamics.

scientific article published in April 2011

Assessment of bias in US waterfowl harvest estimates

article

Author Correction: Large-scale variation in density of an aquatic ecosystem indicator species

scientific article published on 06 November 2019

Balancing precision and risk: should multiple detection methods be analyzed separately in N-mixture models?

scientific article

Band reporting probabilities for mallards recovered in the United States and Canada

article

Bayesian analysis of multi-state data with individual covariates for estimating genetic effects on demography

article

Bayesian inference in camera trapping studies for a class of spatial capture-recapture models.

scientific article published in November 2009

Biodiversity of man-made open habitats in an underused country: a class of multispecies abundance models for count data

article

Comparing spatial capture–recapture modeling and nest count methods to estimate orangutan densities in the Wehea Forest, East Kalimantan, Indonesia

article

Concepts and Practices: Estimating Abundance of Prey Species Using Hierarchical Model-Based Approaches

scientific article published in 2017

Concepts: Assessing Tiger Population Dynamics Using Capture–Recapture Sampling

scientific article published in 2017

Consequences of ignoring group association in spatial capture–recapture analysis

scientific article published on 17 March 2020

Correction: Trap Configuration and Spacing Influences Parameter Estimates in Spatial Capture-Recapture Models.

scientific article published on 23 October 2015

Current approaches using genetic distances produce poor estimates of landscape resistance to interindividual dispersal.

scientific article published on 20 June 2013

Dealing with incomplete and variable detectability in multi-year, multi-site monitoring of ecological populations

article

Demographic analysis from summaries of an age-structured population.

scientific article published in December 2003

Density estimation in a wolverine population using spatial capture-recapture models

article

Density estimation in tiger populations: combining information for strong inference.

scientific article

Density, distribution, and genetic structure of grizzly bears in the Cabinet-Yaak Ecosystem

article by Katherine C. Kendall et al published 15 November 2015 in Journal of Wildlife Management

Density‐habitat relationships of white‐tailed deer (<i>Odocoileus virginianus</i>) in Finland

scientific article published in 2023

Designing occupancy studies: general advice and allocating survey effort

scientific article published in 2005

Dispersal and individual quality in a long lived species

article

Distribution patterns of wintering sea ducks in relation to the North Atlantic Oscillation and local environmental characteristics.

scientific article

Dynamic N-mixture models with temporal variability in detection probability

scientific article published in 2019

Dynamic design of ecological monitoring networks for non-Gaussian spatio-temporal data

article

ESTIMATING SITE OCCUPANCY AND ABUNDANCE USING INDIRECT DETECTION INDICES

article

Eco-evolutionary rescue promotes host-pathogen coexistence

scientific article published in 2018

Effects of Turtle Excluder Devices (TEDs) on Loggerhead Sea Turtle Strandings with Implications for Conservation

scientific article published on 21 December 1995

Efficient statistical mapping of avian count data

article by J. Andrew Royle & Christopher K. Wikle published June 2005 in Environmental and Ecological Statistics

Estimating Black Bear Density Using DNA Data From Hair Snares

article

Estimating Population Size for Capercaillie (Tetrao urogallus L.) with Spatial Capture-Recapture Models Based on Genotypes from One Field Sample

scientific article published on 18 June 2015

Estimating Size and Composition of Biological Communities by Modeling the Occurrence of Species

article

Estimating abundance

scientific article published in May 2016

Estimating abundance of mountain lions from unstructured spatial sampling

article

Estimating and forecasting spatial population dynamics of apex predators using transnational genetic monitoring

scientific article published on 16 November 2020

Estimating landscape resistance to dispersal

article

Estimating migratory connectivity of birds when re-encounter probabilities are heterogeneous.

scientific article

Estimating population density and connectivity of American mink using spatial capture-recapture

scientific article

Estimating species richness and accumulation by modeling species occurrence and detectability.

scientific article

Estimating species - area relationships by modeling abundance and frequency subject to incomplete sampling.

scientific article published on 17 June 2016

Estimating true instead of apparent survival using spatial Cormack-Jolly-Seber models

article

Evaluation of the Status of Anurans on a Refuge in Suburban Maryland

scientific article published in 2007

Examining the occupancy-density relationship for a low-density carnivore

scientific article published in 2017

Exchange algorithms for constructing large spatial designs

scholarly article by J. Andrew Royle published February 2002 in Journal of Statistical Planning and Inference

Experimental lead poisoning in turkey vultures (Cathartes aura).

scientific article published in January 2003

Explaining local-scale species distributions: relative contributions of spatial autocorrelation and landscape heterogeneity for an avian assemblage

scientific article

Generalized site occupancy models allowing for false positive and false negative errors.

scientific article published in April 2006

Genetic tagging in the Anthropocene: scaling ecology from alleles to ecosystems

scientific article published on 26 March 2019

HIERARCHICAL SPATIAL MODELS OF ABUNDANCE AND OCCURRENCE FROM IMPERFECT SURVEY DATA

article

Hierarchical Bayes estimation of species richness and occupancy in spatially replicated surveys

article

Hierarchical Spatial Capture–Recapture Models for Estimating Density from Trapping Arrays

article

Hierarchical distance-sampling models to estimate population size and habitat-specific abundance of an island endemic

scientific article

Hierarchical modeling of an invasive spread: the Eurasian Collared-Dove Streptopelia decaocto in the United States.

scientific article

Hierarchical modeling of cluster size in wildlife surveys

Hierarchical modelling and estimation of abundance and population trends in metapopulation designs

scientific article published on 3 November 2009

Hierarchical models for estimating density from DNA mark-recapture studies.

scientific article published in April 2009

Hierarchical models of animal abundance and occurrence

article

Hierarchical spatial capture-recapture models: modelling population density in stratified populations

article

Hierarchical spatiotemporal matrix models for characterizing invasions.

scientific article published in June 2007

Importance of sampling design and analysis in animal population studies: a comment on Sergio et al

article published in 2007

Incorporating Imperfect Detection into Joint Models of Communities: A response to Warton et al.

scientific article

Incorporating citizen science data in spatially explicit integrated population models

scientific article published on 18 July 2019

Inference about density and temporary emigration in unmarked populations.

scientific article published in July 2011

Inference for finite-sample trajectories in dynamic multi-state site-occupancy models using hidden Markov model smoothing

article

Inferences about population dynamics from count data using multistate models: a comparison to capture-recapture approaches.

scientific article

Integrating occurrence and detectability patterns based on interview data: a case study for threatened mammals in Equatorial Guinea.

scientific article

Integrating resource selection information with spatial capture-recapture

scientific article published in 2013

Integrating side-scan sonar and acoustic telemetry to estimate the annual spawning run size of Atlantic sturgeon in the Hudson River

Large-scale monitoring of shorebird populations using count data andN-mixture models: Black Oystercatcher (Haematopus bachmani) surveys by land and sea

scientific article published in 2012

Large-scale variation in density of an aquatic ecosystem indicator species.

scientific article published on 12 June 2018

Lead poisoning in captive Andean condors (Vultur gryphus).

scientific article published in October 2006

Likelihood analysis of spatial capture-recapture models for stratified or class structured populations

article

Likelihood analysis of species occurrence probability from presence-only data for modelling species distributions

article

Linking landscape characteristics to local grizzly bear abundance using multiple detection methods in a hierarchical model

article

Living on the edge: Opportunities for Amur tiger recovery in China

article

Making Great Leaps Forward: Accounting for Detectability in Herpetological Field Studies

article

Management decision making for fisher populations informed by occupancy modeling

scientific article published in 2016

Markov models for community dynamics allowing for observation error

scientific article published in December 2013

Migratory behavior and winter geography drive differential range shifts of eastern birds in response to recent climate change ⬇️

scientific article published on 26 May 2020

Mixture models for estimating the size of a closed population when capture rates vary among individuals.

scientific article published in June 2003

Model-based approaches to deal with detectability: a comment on Hutto (2016a).

scientific article published on 4 April 2017

Modeling Abundance Index Data from Anuran Calling Surveys

article

Modeling Abundance Using Multinomial N-Mixture Models

scientific article published in 2016

Modeling individual effects in the Cormack-Jolly-Seber model: a state-space formulation.

scientific article published on 28 August 2007

Modeling spatial variation in avian survival and residency probabilities

scientific article published in July 2010

Modeling spatially and temporally complex range dynamics when detection is imperfect

scientific article published on 05 September 2019

Modeling structured population dynamics using data from unmarked individuals.

scientific article

Modeling the effects of environmental disturbance on wildlife communities: avian responses to prescribed fire.

scientific article

Modeling trends from North American breeding bird survey data: a spatially explicit approach

scientific article (publication date: 2013)

Modelling community dynamics based on species-level abundance models from detection/nondetection data

article

Modelling non-Euclidean movement and landscape connectivity in highly structured ecological networks

article

Modelling occurrence and abundance of species when detection is imperfect

article

Modelling predation by transient leopard seals for an ecosystem-based management of Southern Ocean fisheries

article by Jaume Forcada et al published June 2009 in Ecological Modelling

Modelling sound attenuation in heterogeneous environments for improved bioacoustic sampling of wildlife populations

scientific article published in 2018

Models for inference in dynamic metacommunity systems.

scientific article

Movement of Reservoir-Stocked Riverine Fish between Tailwaters and Rivers

article

Movement-assisted localization from acoustic telemetry data

scientific article published on 30 June 2020

N-mixture models for estimating population size from spatially replicated counts.

scientific article published in March 2004

Nightly and Seasonal Patterns of Calling in Common True Katydids (Orthoptera: Tettigoniidae:Pterophylla camellifolia)

article by M. Franklin et al published August 2009 in Journal of Orthoptera research

Observer-free experimental evaluation of habitat and distance effects on the detection of anuran and bird vocalizations

scientific article published on 11 December 2018

Occupancy Patterns of Breeding American Black Ducks

scientific article published in 2019

Occupancy in Community-Level Studies

scientific article published in 2018

Optimal sampling design for spatial capture-recapture

scientific article published on 26 November 2020

Parameter-expanded data augmentation for Bayesian analysis of capture–recapture models

article

Population Influences on Tornado Reports in the United States

scholarly article by Christopher J. Anderson et al published June 2007 in Weather and Forecasting

Population abundance, size structure and sex-ratio in an insular lizard

article

Population size and stopover duration estimation using mark-resight data and Bayesian analysis of a superpopulation model.

scientific article

Presence-only modelling using MAXENT: when can we trust the inferences?

article

ProgramSPACECAP: software for estimating animal density using spatially explicit capture-recapture models

article

Quantifying the relationship between prey density, livestock and illegal killing of leopards

scientific article published in 2022

RESEARCH NOTES: THE EFFECT OF REWARD BAND VALUE ON MID-CONTINENT MALLARD BAND REPORTING RATES

scientific article published in 2005

Random effects and shrinkage estimation in capture-recapture models

article

Reply to Efford on‘Integrating resource selection information with spatial capture-recapture’

scientific article published in 2014

Reserve design to optimize functional connectivity and animal density

scientific article published on 09 July 2019

Scaling-up camera traps: monitoring the planet's biodiversity with networks of remote sensors

scientific article published in 2016

Second cancer incidence and cancer mortality among chronic lymphocytic leukaemia patients: a population-based study.

scientific article

Sexual selection affects local extinction and turnover in bird communities.

scholarly article

Site occupancy models with heterogeneous detection probabilities.

scientific article

Site-occupancy distribution modeling to correct population-trend estimates derived from opportunistic observations.

scientific article

Small mammal use of native warm-season and non-native cool-season grass forage fields

article

Spatial capture--recapture models for jointly estimating population density and landscape connectivity.

scientific article published in February 2013

Spatial capture-recapture models for search-encounter data

article

Spatial capture–recapture for categorically marked populations with an application to genetic capture–recapture

scientific article published in April 2019

Spatial capture–recapture models allowing Markovian transience or dispersal

scientific article published in 2015

Spatial capture–recapture with partial identity: An application to camera traps

article by Ben C. Augustine et al published March 2018 in The Annals of Applied Statistics

Spatial capture–recapture with random thinning for unidentified encounters

scientific article published in 2020

Spatial modeling of survival and residency and application to the Monitoring Avian Productivity and Survivorship program

Spatial modeling of wetland condition in the U.S. Prairie Pothole Region.

scientific article published in June 2002

Spatial proximity moderates genotype uncertainty in genetic tagging studies

scientific article published on 13 July 2020

Spatially explicit inference for open populations: estimating demographic parameters from camera-trap studies.

scientific article

Species richness and occupancy estimation in communities subject to temporary emigration

scientific article

Study of biological communities subject to imperfect detection: bias and precision of community N-mixture abundance models in small-sample situations

article

Tigers on trails: occupancy modeling for cluster sampling.

scientific article published in July 2010

Traffic Effects on Bird Counts on North American Breeding Bird Survey Routes

article

Trap configuration and spacing influences parameter estimates in spatial capture-recapture models

scientific article

Trend estimation in populations with imperfect detection

article

USING THE NORTH AMERICAN BREEDING BIRD SURVEY AS A TOOL FOR CONSERVATION: A CRITIQUE OF BART ET AL. (2004)

article

Unifying population and landscape ecology with spatial capture-recapture

scientific article published in 2017

Use of spatial capture-recapture modeling and DNA data to estimate densities of elusive animals.

scientific article

Using bear rub data and spatial capture-recapture models to estimate trend in a brown bear population

scientific article published on 14 November 2019

Using multiple data sources provides density estimates for endangered Florida panther

article

Using partial aggregation in spatial capture recapture

article by Cyril Milleret et al published 13 June 2018 in Methods in Ecology and Evolution

VEMAP 2: ANNUAL ECOSYSTEM MODEL RESPONSES TO U.S. CLIMATE CHANGE, 1994-2100

article

VEMAP 2: MONTHLY ECOSYSTEM MODEL RESPONSES TO U.S. CLIMATE CHANGE, 1994-2100

article

VEMAP 2: U.S. ANNUAL CLIMATE CHANGE SCENARIOS

scholarly article published 16 March 2001

VEMAP 2: U.S. ANNUAL CLIMATE, 1895-1993

VEMAP 2: U.S. MONTHLY CLIMATE CHANGE SCENARIOS, VERSION 2

scholarly article published 13 December 2000

VEMAP 2: U.S. MONTHLY CLIMATE, 1895-1993, VERSION 2

VEMAP Phase 2 bioclimatic database. I. Gridded historical (20th century) climate for modeling ecosystem dynamics across the conterminous USA

article

What Are Hierarchical Models and How Do We Analyze Them?

scientific article published in 2016

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