List of works - Tiina Manninen

A model integrating the cerebellar granule neuron excitability and calcium signaling pathways

A novel approach to model neuronal signal transduction using stochastic differential equations

Altered synaptic signaling due to $$\beta $$ -amyloid interference in astrocytes: A modeling study

Astrocyte-mediated spike-timing-dependent long-term depression modulates synaptic properties in the developing cortex

scientific article published on 10 November 2020

Cerebellar Purkinje cells control eye movements with a rapid rate code that is invariant to spike irregularity

article

Challenges in Reproducibility, Replicability, and Comparability of Computational Models and Tools for Neuronal and Glial Networks, Cells, and Subcellular Structures.

scientific article published in May 2018

Comparison of discrete- and continuous-state stochastic methods to model neuronal signal transduction

Computational Models for Calcium-Mediated Astrocyte Functions

scientific article published on 4 April 2018

Computational study of noise in a large signal transduction network

scientific article

Contribution of SERCA and IP3 sensitivity to calcium signaling in astrocytes: a computational study

scientific article

Developing Itô stochastic differential equation models for neuronal signal transduction pathways

scientific article published in August 2006

Discrete stochastic simulation of cell signaling: comparison of computational tools

scientific article published in January 2006

Effects of transmitters and amyloid-beta peptide on calcium signals in rat cortical astrocytes: Fura-2AM measurements and stochastic model simulations

scientific article

Estimation of Neuronal Signaling Model Parameters using Deterministic and Stochastic in Silico Training Data: Evaluation of Four Parameter Estimation Methods

Modeling Neuron-Astrocyte Interactions: Towards Understanding Synaptic Plasticity and Learning in the Brain

article by Riikka Havela et al published 2017 in Lecture Notes in Computer Science

Modeling signal transduction in synaptic plasticity: comparison of models and methods.

scientific article published on 20 July 2010

Modeling signal transduction leading to synaptic plasticity: evaluation and comparison of five models

scientific article published on 29 March 2011

Numerical characterization of noisy fluctuations in two different types of stochastic differential equation models of neural signaling

scientific article published on 4 December 2015

Parameter Estimation and Tuning of Firefly Luciferase Pathway Model

Postsynaptic signal transduction models for long-term potentiation and depression

scientific article

Regular and irregular stimuli result in changes in mice eye movement and cerebellar nuclei neuron model behavior.

scientific article published on 18 December 2015

Reproducibility and Comparability of Computational Models for Astrocyte Calcium Excitability

scientific article

Simulation tools for biochemical networks: evaluation of performance and usability

scientific article

Sustainable computational science: the ReScience initiative ⬇️

article

List of works by Tiina Manninen

A model integrating the cerebellar granule neuron excitability and calcium signaling pathways

A novel approach to model neuronal signal transduction using stochastic differential equations

Altered synaptic signaling due to $$\beta $$ -amyloid interference in astrocytes: A modeling study

Astrocyte-mediated spike-timing-dependent long-term depression modulates synaptic properties in the developing cortex

Cerebellar Purkinje cells control eye movements with a rapid rate code that is invariant to spike irregularity

Challenges in Reproducibility, Replicability, and Comparability of Computational Models and Tools for Neuronal and Glial Networks, Cells, and Subcellular Structures.

Comparison of discrete- and continuous-state stochastic methods to model neuronal signal transduction

Computational Models for Calcium-Mediated Astrocyte Functions

Computational study of noise in a large signal transduction network

Contribution of SERCA and IP3 sensitivity to calcium signaling in astrocytes: a computational study

Developing Itô stochastic differential equation models for neuronal signal transduction pathways

Discrete stochastic simulation of cell signaling: comparison of computational tools

Effects of transmitters and amyloid-beta peptide on calcium signals in rat cortical astrocytes: Fura-2AM measurements and stochastic model simulations

Estimation of Neuronal Signaling Model Parameters using Deterministic and Stochastic in Silico Training Data: Evaluation of Four Parameter Estimation Methods

Modeling Neuron-Astrocyte Interactions: Towards Understanding Synaptic Plasticity and Learning in the Brain

Modeling signal transduction in synaptic plasticity: comparison of models and methods.

Modeling signal transduction leading to synaptic plasticity: evaluation and comparison of five models

Numerical characterization of noisy fluctuations in two different types of stochastic differential equation models of neural signaling

Parameter Estimation and Tuning of Firefly Luciferase Pathway Model

Postsynaptic signal transduction models for long-term potentiation and depression

Regular and irregular stimuli result in changes in mice eye movement and cerebellar nuclei neuron model behavior.

Reproducibility and Comparability of Computational Models for Astrocyte Calcium Excitability

Simulation tools for biochemical networks: evaluation of performance and usability

Sustainable computational science: the ReScience initiative ⬇️