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List of works by Derek Aguiar

A quantitative reference transcriptome for Nematostella vectensis early embryonic development: a pipeline for de novo assembly in emerging model systems

scientific article

Bayesian nonparametric discovery of isoforms and individual specific quantification.

scientific article

DELISHUS: an efficient and exact algorithm for genome-wide detection of deletion polymorphism in autism

scientific article

HapCompass: a fast cycle basis algorithm for accurate haplotype assembly of sequence data

scientific article

Haplotype assembly in polyploid genomes and identical by descent shared tracts

scientific article published on July 2013

Haplotype phasing by multi-assembly of shared haplotypes: phase-dependent interactions between rare variants

scientific article

Practical computational methods for regulatory genomics: a cisGRN-Lexicon and cisGRN-browser for gene regulatory networks

scientific article published on January 2010

TUMOR HAPLOTYPE ASSEMBLY ALGORITHMS FOR CANCER GENOMICS

scholarly article published November 2013

The Clark Phase-able Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS

The Clark phaseable sample size problem: long-range phasing and loss of heterozygosity in GWAS.

scientific article published on March 2011

Tractatus: An Exact and Subquadratic Algorithm for Inferring Identical-by-Descent Multi-shared Haplotype Tracts

Transcriptome of American oysters, Crassostrea virginica, in response to bacterial challenge: insights into potential mechanisms of disease resistance

scientific article

Workshop: Robust algorithms for inferring haplotype phase and deletion polymorphism from high-throughput whole genome sequence data

scholarly article published February 2012

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