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List of works by Atsushi Fukushima

A network perspective on nitrogen metabolism from model to crop plants using integrated 'omics' approaches.

scientific article

Acetate-mediated novel survival strategy against drought in plants.

scientific article published on 26 June 2017

Antagonistic regulation of the gibberellic acid response during stem growth in rice

scientific article published on 15 July 2020

Assessing metabolomic and chemical diversity of a soybean lineage representing 35 years of breeding

BioHackathon 2015: Semantics of data for life sciences and reproducible research

scientific article published on 24 February 2020

Comparative Characterization of the Leaf Tissue of Physalis alkekengi and Physalis peruviana Using RNA-seq and Metabolite Profiling

scientific article (publication date: 2016)

Comparative co-expression network analysis extracts the SlHSP70 gene affecting to shoot elongation of tomato

scientific article published on 01 September 2019

Comparative metabolomics charts the impact of genotype-dependent methionine accumulation in Arabidopsis thaliana.

scientific article published on 31 March 2010

Compensation for systematic cross-contribution improves normalization of mass spectrometry based metabolomics data

scientific article

Current challenges and future potential of tomato breeding using omics approaches ⬇️

scientific article published on March 1, 2013

Cytosolic GLUTAMINE SYNTHETASE 1;1 modulates metabolism and chloroplast development in roots

scientific article published on 05 February 2020

Deciphering Starch Quality of Rice Kernels Using Metabolite Profiling and Pedigree Network Analysis

scientific article published on 15 December 2011

Development of RIKEN Plant Metabolome MetaDatabase

scientific article published on 01 March 2022

DiffCorr: An R package to analyze and visualize differential correlations in biological networks ⬇️

scientific article published on December 13, 2012

Effects of molybdenum deficiency and defects in molybdate transporter MOT1 on transcript accumulation and nitrogen/sulphur metabolism in Arabidopsis thaliana

scientific article published on 03 December 2010

Erratum: Acetate-mediated novel survival strategy against drought in plants

scientific article published on 17 July 2017

Fruit setting rewires central metabolism via gibberellin cascades

scientific article published on 03 September 2020

High-Throughput Sequencing and De Novo Assembly of Red and Green Forms of the Perilla frutescens var. crispa Transcriptome

scientific article

Human uterus myoma and gene expression profiling: A novel in vitro model for studying secretory leukocyte protease inhibitor-mediated tumor invasion.

scientific article published on 26 May 2016

Impact of clock-associated Arabidopsis pseudo-response regulators in metabolic coordination

scholarly article

Integrated analysis of transcriptome and metabolome of Arabidopsis albino or pale green mutants with disrupted nuclear-encoded chloroplast proteins

scientific article

Integrated network analysis and effective tools in plant systems biology.

scientific article

Lack of cytosolic glutamine synthetase1;2 in vascular tissues of axillary buds causes severe reduction in their outgrowth and disorder of metabolic balance in rice seedlings

scientific article

Light Controls Protein Localization through Phytochrome-Mediated Alternative Promoter Selection.

scientific article published on 7 November 2017

Metabolic Reprogramming in Leaf Lettuce Grown Under Different Light Quality and Intensity Conditions Using Narrow-Band LEDs.

scientific article published on 21 May 2018

Metabolite and Phytohormone Profiling Illustrates Metabolic Reprogramming as an Escape Strategy of Deepwater Rice during Partially Submerged Stress

scientific article published on 14 February 2020

Metabolomic Characterization of Knockout Mutants in Arabidopsis: Development of a Metabolite Profiling Database for Knockout Mutants in Arabidopsis. ⬇️

scientific article published on 14 May 2014

Metabolomic correlation-network modules in Arabidopsis based on a graph-clustering approach. ⬇️

scientific article published on January 2011

Metabolomics data reveal a crucial role of cytosolic glutamine synthetase 1;1 in coordinating metabolic balance in rice.

scientific article

Recent progress in the development of metabolome databases for plant systems biology.

scientific article published on 4 April 2013

Remodels Chloroplastic Monogalactosyldiacylglycerol by Liberating α-Linolenic Acid in Arabidopsis Leaves under Heat Stress

scientific article published on 02 July 2018

Third DWF1 paralog in Solanaceae, sterol Δ-isomerase, branches withanolide biosynthesis from the general phytosterol pathway

article published in the Proceedings of the National Academy of Sciences of the United States of America

Transcript profiling of an Arabidopsis PSEUDO RESPONSE REGULATOR arrhythmic triple mutant reveals a role for the circadian clock in cold stress response.

scientific article

Transcriptional and metabolic programs following exposure of plants to UV-B irradiation ⬇️

scientific article published on December 1, 2011

Transcriptomic, Hormonomic and Metabolomic Analyses Highlighted the Common Modules Related to Photosynthesis, Sugar Metabolism and Cell Division in Parthenocarpic Tomato Fruits during Early Fruit Set

scientific article published on 23 April 2022

Two glycosyltransferases involved in anthocyanin modification delineated by transcriptome independent component analysis in Arabidopsis thaliana

scientific article

Using metabolomic approaches to explore chemical diversity in rice

scientific article

Whole transcriptome analysis using next-generation sequencing of sterile-cultured Eisenia andrei for immune system research

scientific article

eQTLs Regulating Transcript Variations Associated with Rapid Internode Elongation in Deepwater Rice.

scientific article published on 13 October 2017

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