List of works by Mary Shimoyama

2015 Guidelines for Establishing Genetically Modified Rat Models for Cardiovascular Research

scientific article

A prioritization analysis of disease association by data-mining of functional annotation of human genes

scientific article

A revised nomenclature for the human and rodent alpha-tubulin gene family

scientific article published in June 2007

Analysis of disease-associated objects at the Rat Genome Database

scientific article published on 21 June 2013

Clinical diagnostic whole genome sequencing in a paediatric population: experience from our WGS genetics clinic

article

Comprehensive coverage of cardiovascular disease data in the disease portals at the Rat Genome Database

scientific article

Corrigendum to “A revised nomenclature for the human and rodent α-tubulin gene family” [Genomics 90 (2007) 285–289]

scientific article published in April 2009

Disease Ontology: improving and unifying disease annotations across species.

scientific article

Disease pathways at the Rat Genome Database Pathway Portal: genes in context-a network approach to understanding the molecular mechanisms of disease

scientific article

Disease, Models, Variants and Altered Pathways-Journeying RGD Through the Magnifying Glass

scientific article

EHR-based phenome wide association study in pancreatic cancer

scientific article

Exploring genetic, genomic, and phenotypic data at the rat genome database

scientific article

Exploring human disease using the Rat Genome Database

scientific article

Integrated curation and data mining for disease and phenotype models at the Rat Genome Database

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

scientific article

Integrative genomics: in silico coupling of rat physiology and complex traits with mouse and human data

scientific article

Model organism databases in behavioral neuroscience

scientific article published on January 2012

Multiscale modeling and data integration in the virtual physiological rat project

scientific article

Next generation phenotyping using the unified medical language system

scientific article

OntoMate: a text-mining tool aiding curation at the Rat Genome Database

scientific article

Ontology searching and browsing at the Rat Genome Database

scientific article published on 20 March 2012

PhenoMiner: a quantitative phenotype database for the laboratory rat, Rattus norvegicus. Application in hypertension and renal disease

scientific article

PhenoMiner: quantitative phenotype curation at the rat genome database

scientific article

Quantitative phenotype analysis to identify, validate and compare rat disease models

RGD: a comparative genomics platform

scientific article published on January 2011

RNAcentral: a hub of information for non-coding RNA sequences

scientific article published on 5 November 2018

RNAcentral: a hub of information for non-coding RNA sequences

scholarly article published in Nucleic Acids Research

Rat Genome Database (RGD): mapping disease onto the genome

scientific article

Rat Genome Database: a unique resource for rat, human, and mouse quantitative trait locus data

scientific article

Rat Genome and Model Resources

scientific article published on July 2017

Rat Strain Ontology: structured controlled vocabulary designed to facilitate access to strain data at RGD.

scientific article

Successful Application of Whole Genome Sequencing in a Medical Genetics Clinic

scientific article published on 28 November 2016

The Chinchilla Research Resource Database: resource for an otolaryngology disease model.

scientific article

The Disease Portals, disease-gene annotation and the RGD disease ontology at the Rat Genome Database

scientific article published on 23 March 2016

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts

scientific article

The Rat Genome Database (RGD): developments towards a phenome database

scientific article

The Rat Genome Database 2009: variation, ontologies and pathways

scientific article

The Rat Genome Database 2013--data, tools and users

scientific article (publication date: July 2013)

The Rat Genome Database 2015: genomic, phenotypic and environmental variations and disease

scientific article

The Rat Genome Database curation tool suite: a set of optimized software tools enabling efficient acquisition, organization, and presentation of biological data

scientific article

The Rat Genome Database pathway portal

scientific article

The Rat Genome Database, update 2007--easing the path from disease to data and back again

scientific article

The Vertebrate Trait Ontology: a controlled vocabulary for the annotation of trait data across species

scientific article

The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications

scientific article

The pathway ontology - updates and applications

scientific article

The rat genome database curators: who, what, where, why

scientific article

The updated RGD Pathway Portal utilizes increased curation efficiency and provides expanded pathway information

scientific article

Three ontologies to define phenotype measurement data

scientific article

Tools and strategies for physiological genomics: the Rat Genome Database

scientific article published on 16 August 2005

Using multiple ontologies to integrate complex biological data

scientific article

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