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List of works by Pemra Özbek

A computational docking study on the pH dependence of peptide binding to HLA-B27 sub-types differentially associated with ankylosing spondylitis

scientific article

Community-wide assessment of protein-interface modeling suggests improvements to design methodology

scientific article

Computational characterization of residue couplings and micropolymorphism-induced changes in the dynamics of two differentially disease-associated human MHC class-I alleles

scientific article published in March 2017

DNABINDPROT: fluctuation-based predictor of DNA-binding residues within a network of interacting residues.

scientific article

DynaFace: Discrimination between Obligatory and Non-obligatory Protein-Protein Interactions Based on the Complex's Dynamics

scientific article published on 27 October 2015

Dynamic characterization of HLA-B*44 Alleles: A comparative molecular dynamics simulation study.

scientific article published on 18 March 2016

Hot spots in a network of functional sites

scientific article

ProSNEx: a web-based application for exploration and analysis of protein structures using network formalism

scientific article published on 01 July 2019

Revisiting allostery in CREB-binding protein (CBP) using residue-based interaction energy

scientific article published on 19 May 2020

Sequence-structure-function relationships in class I MHC: A local frustration perspective

scientific article published on 18 May 2020

gRINN: a tool for calculation of residue interaction energies and protein energy network analysis of molecular dynamics simulations.

scientific article published in July 2018

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