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List of works by Karthik Anantharaman

A new view of the tree of life

scientific article (publication date: 11 April 2016)

Abiotic Reductive Dechlorination of cis-Dichloroethylene by Fe Species Formed during Iron- or Sulfate-Reduction ⬇️

scientific article published on May 19, 2011

Accurate and complete genomes from metagenomes

scientific article published on 18 March 2020

Analysis of five complete genome sequences for members of the class Peribacteria in the recently recognized Peregrinibacteria bacterial phylum.

scientific article published on 28 January 2016

Asgard archaea illuminate the origin of eukaryotic cellular complexity.

scientific article published on 11 January 2017

Author Correction: Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria

scientific article published on 26 March 2019

Author Correction: Roadmap for naming uncultivated Archaea and Bacteria

scientific article published on 12 November 2020

Biosynthetic capacity, metabolic variety and unusual biology in the CPR and DPANN radiations

scientific article published on 01 October 2018

Clades of huge phages from across Earth's ecosystems

scientific article published on 12 February 2020

Complete 4.55-Megabase-Pair Genome of "Candidatus Fluviicola riflensis," Curated from Short-Read Metagenomic Sequences

scientific article

Connections between freshwater carbon and nutrient cycles revealed through reconstructed population genomes

Deciphering Active Prophages from Metagenomes

scientific article published on 24 March 2022

Depth-discrete metagenomics reveals the roles of microbes in biogeochemical cycling in the tropical freshwater Lake Tanganyika

scientific article published on 09 February 2021

Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface.

scientific article published on 29 January 2018

Diverse manganese(II)-oxidizing bacteria are prevalent in drinking water systems

scientific article published on 9 December 2016

Diversity and distribution of sulfur metabolic genes in the human gut microbiome and their association with colorectal cancer

scientific article published on 19 April 2022

Evidence for hydrogen oxidation and metabolic plasticity in widespread deep-sea sulfur-oxidizing bacteria

scientific article published on 20 December 2012

Expanded Phylogenetic Diversity and Metabolic Flexibility of Mercury-Methylating Microorganisms

scientific article published on 18 August 2020

Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle

scientific article published on 21 February 2018

Freshwater carbon and nutrient cycles revealed through reconstructed population genomes

scientific article published on 10 December 2018

Functional metagenomic selection of ribulose 1, 5-bisphosphate carboxylase/oxygenase from uncultivated bacteria

scientific article

Gammaproteobacteria mediating utilization of methyl-, sulfur- and petroleum organic compounds in deep ocean hydrothermal plumes

scientific article published on 20 August 2020

Genome diversification in globally distributed novel marine Proteobacteria is linked to environmental adaptation

scientific article published on 11 May 2020

Genome-Resolved Meta-Omics Ties Microbial Dynamics to Process Performance in Biotechnology for Thiocyanate Degradation.

scientific article

Genomic and transcriptomic analyses of the facultative methanotroph Methylocystis sp. strain SB2 grown on methane or ethanol

scientific article published on 7 March 2014

Genomic and transcriptomic evidence for scavenging of diverse organic compounds by widespread deep-sea archaea

scientific article

Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2 concentrations.

scientific article published on 26 April 2016

Hydrogen-based metabolism - An ancestral trait in lineages sibling to the Cyanobacteria

Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria

scientific article published in Nature Communications

Impacts of microbial assemblage and environmental conditions on the distribution of anatoxin-a producing cyanobacteria within a river network

scientific article published on 26 February 2019

METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks

scientific article published on 16 February 2022

Major bacterial lineages are essentially devoid of CRISPR-Cas viral defence systems

scientific article published on 3 February 2016

Mediterranean grassland soil C-N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms

scientific article published on 20 May 2019

Megaphages infect Prevotella and variants are widespread in gut microbiomes

scientific article published on 28 January 2019

Metagenomic resolution of microbial functions in deep-sea hydrothermal plumes across the Eastern Lau Spreading Center

scientific article

New CRISPR-Cas systems from uncultivated microbes.

scientific article

Physiological and genomic evidence of cysteine degradation and aerobic hydrogen sulfide production in freshwater bacteria

scientific article published in 2023

Potential for microbial H2 and metal transformations associated with novel bacteria and archaea in deep terrestrial subsurface sediments.

scientific article

Predicting the response of the deep-ocean microbiome to geochemical perturbations by hydrothermal vents.

scientific article

Processing of grassland soil C-N compounds into soluble and volatile molecules is depth stratified and mediated by genomically novel bacteria and archaea

Rice Paddy Nitrospirae Carry and Express Genes Related to Sulfate Respiration: Proposal of the New Genus "Candidatus Sulfobium".

scientific article published on 15 December 2017

Roadmap for naming uncultivated Archaea and Bacteria

scientific article published on 08 June 2020

Spatially resolved sampling reveals dynamic microbial communities in rising hydrothermal plumes across a back-arc basin

scientific article published on 9 December 2014

Sulfur oxidation genes in diverse deep-sea viruses

scientific article

The metatranscriptome of a deep-sea hydrothermal plume is dominated by water column methanotrophs and lithotrophs

scientific article

The microbiology of deep-sea hydrothermal vent plumes: ecological and biogeographic linkages to seafloor and water column habitats

scientific article published on 21 May 2013

Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system.

scientific article published on 24 October 2016

VIBRANT: automated recovery, annotation and curation of microbial viruses, and evaluation of viral community function from genomic sequences

scientific article published on 10 June 2020

pH impact on reductive dechlorination of cis-dichloroethylene by Fe precipitates: an X-ray absorption spectroscopy study

scientific article

vRhyme enables binning of viral genomes from metagenomes

scientific article published in 2022

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