Search filters

List of works by Roman Zubarev

A direct comparison of protein structure in the gas and solution phase: the Trp-cage

scientific article published on 01 November 2007

ATP enhances neuronal differentiation of PC12 cells by activating PKCα interactions with cytoskeletal proteins.

scientific article

Advantages of External Accumulation for Electron Capture Dissociation in Fourier Transform Mass Spectrometry

scientific article published on 01 July 2001

Altered Fc galactosylation in IgG4 is a potential serum marker for chronic lung disease

scientific article published on 31 July 2018

Alzheimer's Disease and Mild Cognitive Impairment are Associated with Elevated Levels of Isoaspartyl Residues in Blood Plasma Proteins ⬇️

scientific article published on January 1, 2011

An integrative proteomics method identifies a regulator of translation during stem cell maintenance and differentiation

scientific article published on 12 November 2021

An updated h-index measures both the primary and total scientific output of a researcher

scientific article

Analytical utility of small neutral losses from reduced species in electron capture dissociation studied using SwedECD database.

scientific article published on 7 October 2008

Anticancer Effect of Deuterium Depleted Water - Redox Disbalance Leads to Oxidative Stress

scientific article published on 13 September 2019

Apoptotic, regenerative, and immune-related signaling in human islets from type 2 diabetes individuals.

scientific article

Application of amide hydrogen/deuterium exchange mass spectrometry for epitope mapping in human cystatin C.

scientific article published on 29 August 2016

Applications of electron-ion dissociation reactions for analysis of polycationic chitooligosaccharides in Fourier transform mass spectrometry.

scientific article published in November 2003

Approach for Identifying Human Leukocyte Antigen (HLA)-DR Bound Peptides from Scarce Clinical Samples

scientific article published on 24 July 2016

Automated de novo sequencing of proteins by tandem high-resolution mass spectrometry.

scientific article published on September 2000

Autoreactivity to malondialdehyde-modifications in rheumatoid arthritis is linked to disease activity and synovial pathogenesis

scientific article published on 21 June 2017

Backbone carbonyl group basicities are related to gas-phase fragmentation of peptides and protein folding.

scientific article published in January 2007

Biology/Disease-Driven Initiative on Protein-Aggregation Diseases of the Human Proteome Project: Goals and Progress to Date

scientific article published on 28 September 2018

Brain Proteome of Drosophila melanogaster Is Enriched with Nuclear Proteins

scientific article published on 01 January 2019

Brain Proteomics Supports the Role of Glutamate Metabolism and Suggests Other Metabolic Alterations in Protein l-Isoaspartyl Methyltransferase (PIMT)-Knockout Mice ⬇️

scientific article published on September 10, 2013

C alpha-C backbone fragmentation dominates in electron detachment dissociation of gas-phase polypeptide polyanions.

scientific article

C57BL/6 mice need MHC class II Aq to develop collagen-induced arthritis dependent on autoreactive T cells

scientific article published on 05 October 2012

Calibration function for the Orbitrap FTMS accounting for the space charge effect.

scientific article published on 7 July 2010

Carbonyl charge solvation patterns may relate to fragmentation classes in collision-activated dissociation.

scientific article published on 12 June 2012

Cationic gold nanoparticles elicit mitochondrial dysfunction: a multi-omics study

scientific article published on 13 March 2019

Cell line profiling to improve monoclonal antibody production.

scientific article published on 19 November 2013

Cerebrospinal fluid protein patterns in neurodegenerative disease revealed by liquid chromatography-Fourier transform ion cyclotron resonance mass spectrometry.

scientific article published in December 2004

Characterization of an N-acylated glucagon-like peptide-1 derivative by electron capture dissociation

scientific article published on 01 April 2005

Chemosensory proteins, major salivary factors in caterpillar mandibular glands.

scientific article

Coaxial multi-electrode cell ('O-trap') for high-sensitivity detection at a multiple frequency in Fourier transform ion cyclotron resonance mass spectrometry: main design and modeling results.

scientific article published on January 2006

Collision-induced dissociation fragmentation inside disulfide C-terminal loops of natural non-tryptic peptides.

scientific article published on 30 April 2013

Combination of nozzle-skimmer fragmentation and partial acid hydrolysis in electrospray ionization time-of-flight mass spectrometry of synthetic peptides ⬇️

scientific article published on January 1, 1998

Comparative Proteomics of Dying and Surviving Cancer Cells Improves the Identification of Drug Targets and Sheds Light on Cell Life/Death Decisions

scientific article published on 23 March 2018

Comparison of electron capture dissociation and collisionally activated dissociation of polycations of peptide nucleic acids

article

Complementary sequence preferences of electron-capture dissociation and vibrational excitation in fragmentation of polypeptide polycations.

scientific article published in August 2006

Complete characterization of posttranslational modification sites in the bovine milk protein PP3 by tandem mass spectrometry with electron capture dissociation as the last stage

scientific article published on 01 May 2003

Composition and Antimicrobial Activity of the Skin Peptidome of Russian Brown Frog Rana temporaria ⬇️

scientific article published on November 13, 2012

Covariation of Peptide Abundances Accurately Reflects Protein Concentration Differences

scientific article

Cytotoxic and Proinflammatory Effects of Metal-Based Nanoparticles on THP-1 Monocytes Characterized by Combined Proteomics Approaches.

scientific article published on 15 December 2016

DAF-16/FOXO requires Protein Phosphatase 4 to initiate transcription of stress resistance and longevity promoting genes

scientific article published on 09 January 2020

De novo sequencing of antimicrobial peptides isolated from the venom glands of the wolf spider Lycosa singoriensis.

scientific article

De novo sequencing of peptides secreted by the skin glands of the Caucasian Green Frog Rana ridibunda.

scientific article published on November 2008

DeMix workflow for efficient identification of cofragmented peptides in high resolution data-dependent tandem mass spectrometry

scientific article

DeMix-Q: Quantification-Centered Data Processing Workflow

scientific article

Detection of viral proteins in human cells lines by xeno-proteomics: elimination of the last valid excuse for not testing every cellular proteome dataset for viral proteins

scientific article (publication date: 2014)

Development of autoantibodies against muscle-specific FHL1 in severe inflammatory myopathies.

scientific article

Diagnostic urinary proteome profile for immunoglobulin a nephropathy

scientific article published in May 2015

Dissociation of peptide ions by fast atom bombardment in a quadrupole ion trap

scientific article published on 01 January 2005

Dissociative recombination cross section and branching ratios of protonated dimethyl disulfide and N-methylacetamide.

scientific article published in September 2004

Distinguishing and quantifying peptides and proteins containing D-amino acids by tandem mass spectrometry.

scientific article published in July 2005

Dynamic proteomics reveals high plasticity of cellular proteome: growth-related and drug-induced changes in cancer cells are comparable

scientific article published on 30 November 2018

Effect of host plant and immune challenge on the levels of chemosensory and odorant-binding proteins in caterpillar salivary glands.

scientific article published on 29 April 2015

Effects of Peptide Backbone Amide-to-Ester Bond Substitution on the Cleavage Frequency in Electron Capture Dissociation and Collision-Activated Dissociation ⬇️

scientific article published on May 5, 2011

Effects of low-level deuterium enrichment on bacterial growth

scientific article

Electron capture dissociation LC/MS/MS for bottom-up proteomics

scientific article published on 01 January 2009

Electron capture dissociation distinguishes a single D-amino acid in a protein and probes the tertiary structure.

scientific article

Electron capture dissociation for structural characterization of multiply charged protein cations

scientific article published on 01 February 2000

Electron capture dissociation of gaseous multiply charged ions by Fourier-transform ion cyclotron resonance

scientific article (publication date: March 2001)

Electron capture dissociation of polypeptides in a three-dimensional quadrupole ion trap: Implementation and first results

scientific article published on 01 January 2005

Electron capture dissociation of polypeptides using a 3 Tesla Fourier transform ion cyclotron resonance mass spectrometer.

scientific article published in January 2002

Electron capture dissociation proceeds with a low degree of intramolecular migration of peptide amide hydrogens

scientific article

Electron-capture dissociation tandem mass spectrometry.

scientific article published on February 2004

Electrospray Ionization Tandem Mass Spectrometry Sequencing of Novel Skin Peptides from Ranid Frogs Containing Disulfide Bridges

scientific article published on 01 January 2007

Establishing a Proteomics-Based Monocyte Assay To Assess Differential Innate Immune Activation Responses.

scientific article published on 25 May 2016

Expression proteomics study to determine metallodrug targets and optimal drug combinations

scientific article

Extent of Modifications in Human Proteome Samples and Their Effect on Dynamic Range of Analysis in Shotgun Proteomics

scientific article published on 02 October 2006

Facile disulfide bond cleavage in gaseous peptide and protein cations by ultraviolet photodissociation at 157 nm.

scientific article published in October 2005

Fourier transform ion cyclotron resonance mass spectrometer with coaxial multi-electrode cell ('O-trap'): first experimental demonstration

scientific article published on 01 July 2010

Fragmentation of positively-charged biological ions activated with a beam of high-energy cations.

scientific article

Functional Identification of Target by Expression Proteomics (FITExP) reveals protein targets and highlights mechanisms of action of small molecule drugs

scientific article published on 8 June 2015

Functional and Structural Characterization of a Novel HLA-DRB1*04:01-Restricted α-Enolase T Cell Epitope in Rheumatoid Arthritis

scientific article

Heightened immune response to autocitrullinated Porphyromonas gingivalis peptidylarginine deiminase: a potential mechanism for breaching immunologic tolerance in rheumatoid arthritis.

scientific article published on 05 March 2013

Heme binding in gas-phase holo-myoglobin cations: distal becomes proximal?

scientific article published on 19 July 2011

High levels of the adhesion molecule CD44 on leukemic cells generate acute myeloid leukemia relapse after withdrawal of the initial transforming event

scientific article

Histone Purification Combined with High-Resolution Mass Spectrometry to Examine Histone Post-Translational Modifications and Histone Variants in Caenorhabditis elegans

scientific article published on 01 December 2020

How well can morphology assess cell death modality? A proteomics study

scientific article (publication date: 2016)

Hydrogen rearrangement to and from radical z fragments in electron capture dissociation of peptides.

scientific article published on 23 October 2006

Identification and characterization of antibodies elicited by human cystatin C fragment.

scientific article published on 5 December 2017

Identification of dominant signaling pathways from proteomics expression data.

scientific article

IgG Fc galactosylation predicts response to methotrexate in early rheumatoid arthritis.

scientific article published on 09 August 2017

IgG antibodies to cyclic citrullinated peptides exhibit profiles specific in terms of IgG subclasses, Fc-glycans and a fab-Peptide sequence

scientific article

IgM antibodies against phosphorylcholine promote polarization of T regulatory cells from patients with atherosclerotic plaques, systemic lupus erythematosus and healthy donors.

scientific article published on 16 November 2017

Immunoaffinity enrichments followed by mass spectrometric detection for studying global protein tyrosine phosphorylation.

scientific article

Impact of temperature dependent sampling procedures in proteomics and peptidomics--a characterization of the liver and pancreas post mortem degradome

scientific article

Improved low-energy electron injection systems for high rate electron capture dissociation in Fourier transform ion cyclotron resonance mass spectrometry

scientific article published on 01 January 2001

In silico instrumental response correction improves precision of label-free proteomics and accuracy of proteomics-based predictive models.

scientific article published on 15 April 2013

In silico proteome-wide amino aCid and elemental composition (PACE) analysis of expression proteomics data provides a fingerprint of dominant metabolic processes.

scientific article

Ion-Based Proteome-Integrated Solubility Alteration Assays for Systemwide Profiling of Protein-Molecule Interactions

scientific article published on 04 May 2022

Ionization energies of multiply protonated polypeptides obtained by tandem ionization in Fourier transform mass spectrometers.

scientific article

Isolation and characterization of autoantibodies against human cystatin C.

scientific article published on 8 June 2016

Isotopic resonance at 370 ppm deuterium negatively affects kinetics of luciferin oxidation by luciferase

scientific article published in Scientific Reports

Isotopic resonance hypothesis: experimental verification by Escherichia coli growth measurements

scientific article published on 18 March 2015

LC-MS/MS with 2D mass mapping of skin secretions' peptides as a reliable tool for interspecies identification inside Rana esculenta complex

scientific article published on 03 March 2012

Letter: The Diagnostic Value of Amino Acid Side-Chain Losses in Electron Capture Dissociation of Polypeptides. Comment on: “Can the (M.−X) Region in Electron Capture Dissociation Provide Reliable Information on Amino Acid Composition of Polypepti

article

Liquid chromatography at critical conditions: comprehensive approach to sequence-dependent retention time prediction.

scientific article published in November 2006

Low-mass ions observed in plasma desorption mass spectrometry of high explosives

scientific article published on 01 March 2000

MS analysis of rheumatoid arthritic synovial tissue identifies specific citrullination sites on fibrinogen.

scientific article published on 25 January 2010

Mass spectrometric de novo sequencing of natural non-tryptic peptides: comparing peculiarities of collision-induced dissociation (CID) and high energy collision dissociation (HCD).

scientific article published in December 2014

Mass spectrometric study of bradykinin-related peptides (BRPs) from the skin secretion of Russian ranid frogs

scientific article published on 14 March 2011

Mass spectrometric study of peptides secreted by the skin glands of the brown frog Rana arvalis from the Moscow region.

scientific article published in May 2009

Membrane-assisted isoelectric focusing device as a micropreparative fractionator for two-dimensional shotgun proteomics.

scientific article

ModifiComb, a new proteomic tool for mapping substoichiometric post-translational modifications, finding novel types of modifications, and fingerprinting complex protein mixtures.

scientific article published on 25 January 2006

Molecular profiling of prostate cancer derived exosomes may reveal a predictive signature for response to docetaxel

scientific article

Multijunction Capillary Isoelectric Focusing Device Combined with Online Membrane-Assisted Buffer Exchanger Enables Isoelectric Point Fractionation of Intact Human Plasma Proteins for Biomarker Discovery.

scientific article

Myeloid-derived suppressor cells express the death receptor Fas and apoptose in response to T cell–expressed FasL ⬇️

scientific article published on March 30, 2011

N-terminal peptide sequence repetition influences the kinetics of backbone fragmentation: a manifestation of the Jahn-Teller effect?

scientific article published on 30 April 2013

Natural polymorphisms in Tap2 influence negative selection and CD4∶CD8 lineage commitment in the rat

scientific article

Novel cysteine tags for the sequencing of non-tryptic disulfide peptides of anurans: ESI-MS study of fragmentation efficiency.

scientific article published on 7 October 2011

Novel natural peptides from Hyla arborea schelkownikowi skin secretion

scientific article published on 01 June 2010

Novel proline-hydroxyproline glycopeptides from the dandelion (Taraxacum officinale Wigg.) flowers: de novo sequencing and biological activity

scientific article

On the Effect of Planetary Stable Isotope Compositions on Growth and Survival of Terrestrial Organisms

scientific article

On the accuracy of polypeptide masses measured in a linear ion trap

scientific article published on 01 January 2005

On the proper use of mass accuracy in proteomics.

scientific article

Optimization of immunoaffinity enrichment and detection: toward a comprehensive characterization of the phosphotyrosine proteome of K562 cells by liquid chromatography-mass spectrometry

scientific article published on 14 March 2011

Optimizing heterologous protein production in the periplasm of E. coli by regulating gene expression levels.

scientific article published on 12 March 2013

Optimizing recombinant protein production in the E. coli periplasm alleviates stress.

scientific article published on 13 April 2018

Orbitrap mass spectrometry.

scientific article

Oxidative Stress Induced by the Deubiquitinase Inhibitor b-AP15 Is Associated with Mitochondrial Impairment

scientific article published on 10 June 2019

Patients with anti-Jo1 antibodies display a characteristic IgG Fc-glycan profile which is further enhanced in anti-Jo1 autoantibodies

scientific article published in Scientific Reports

Pharmacoproteomics Profiling of Plasma From β-Thalassemia Patients in Response to Hydroxyurea Treatment

scientific article published on 27 August 2018

Phosphorylation of Leukotriene C4 Synthase at Serine 36 Impairs Catalytic Activity

scientific article published on 30 June 2016

Physicochemical Properties Determining the Detection Probability of Tryptic Peptides in Fourier Transform Mass Spectrometry. A Correlation Study

scientific article published on 01 October 2004

Polymorphic estrogen receptor binding site causes Cd2-dependent sex bias in the susceptibility to autoimmune diseases

scientific article published on 22 September 2021

Porcine P2 myelin protein primary structure and bound fatty acids determined by mass spectrometry

scientific article published on 30 May 2010

Posttranslational Targeting of a Recombinant Protein Promotes Its Efficient Secretion into the Escherichia coli Periplasm

scientific article published on 17 June 2019

Predictive urinary biomarkers for steroid-resistant and steroid-sensitive focal segmental glomerulosclerosis using high resolution mass spectrometry and multivariate statistical analysis

scientific article

Primordial soup was edible: abiotically produced Miller-Urey mixture supports bacterial growth

scientific article

Probing combinatorial library diversity by mass spectrometry.

scientific article

Proteasome inhibitor b-AP15 induces enhanced proteotoxicity by inhibiting cytoprotective aggresome formation

scientific article published on 13 February 2019

Protein biomarkers in vernix with potential to predict the development of atopic eczema in early childhood

scientific article

Protein primary structure using orthogonal fragmentation techniques in Fourier transform mass spectrometry.

scientific article

Proteogenomics of Malignant Melanoma Cell Lines: The Effect of Stringency of Exome Data Filtering on Variant Peptide Identification in Shotgun Proteomics

scientific article published on 16 April 2018

Proteogenomics of adenosine-to-inosine RNA editing in the fruit fly

scientific article published on 17 October 2018

Proteome Integral Solubility Alteration: A High-Throughput Proteomics Assay for Target Deconvolution

scientific article published on 14 October 2019

Proteomic Analysis of Mouse Brain Subjected to Spaceflight ⬇️

scientific article published on 20 December 2018

Proteomic Identification of Heat Shock-Induced Danger Signals in a Melanoma Cell Lysate Used in Dendritic Cell-Based Cancer Immunotherapy.

scientific article published on 18 March 2018

Proteomic analysis of urinary biomarker candidates for nonmuscle invasive bladder cancer

scientific article published on 02 December 2011

Proteomic pathway analysis reveals inflammation increases myeloid-derived suppressor cell resistance to apoptosis

scientific article

Proteomics Reveals a Role for Attachment in Monocyte Differentiation into Efficient Proinflammatory Macrophages

scientific article published on 28 July 2015

Proteomics and pathway analysis identifies JNK signaling as critical for high linear energy transfer radiation-induced apoptosis in non-small lung cancer cells

scientific article published on 23 January 2009

Proteomics-grade de novo sequencing approach

scientific article published in 2005

Radical a-ions in electron capture dissociation: on the origin of species

article

Rapid and deep human proteome analysis by single-dimension shotgun proteomics.

scientific article published on 22 July 2013

Reactions of polypeptide ions with electrons in the gas phase.

scientific article

Redox regulation of PTPN22 affects the severity of T-cell-dependent autoimmune inflammation

scientific article published on 19 May 2022

Relative specificities of water and ammonia losses from backbone fragments in collision-activated dissociation.

scientific article published on 16 May 2007

Release of Active Peptidyl Arginine Deiminases by Neutrophils Can Explain Production of Extracellular Citrullinated Autoantigens in Rheumatoid Arthritis Synovial Fluid

scientific article published on 5 August 2015

Repurposing of auranofin: Thioredoxin reductase remains a primary target of the drug

scientific article published on 01 April 2019

Role of stable isotopes in life--testing isotopic resonance hypothesis

scientific article published on April 2011

Room-Temperature Infrared Spectroscopy Combined with Mass Spectrometry Distinguishes Gas-Phase Protein Isomers

scientific article published on 01 January 2009

STAT3 differential scanning fluorimetry and differential scanning light scattering assays: Addressing a missing link in the characterization of STAT3 inhibitor interactions

scientific article published on 17 July 2018

Secondary losses via gamma-lactam formation in hot electron capture dissociation: a missing link to complete de novo sequencing of proteins?

scientific article published in June 2003

Separation of polypeptides by isoelectric point focusing in electrospray-friendly solution using a multiple-junction capillary fractionator

scientific article published on 23 July 2012

Sequence scrambling in shotgun proteomics is negligible

scientific article published on 15 April 2011

Shared immunological targets in the lungs and joints of patients with rheumatoid arthritis: identification and validation.

scientific article published on 9 May 2014

Shifted-basis technique improves accuracy of peak position determination in Fourier transform mass spectrometry.

scientific article published in April 2004

Shotgun brain proteomics reveals early molecular signature in presymptomatic mouse model of Alzheimer's disease.

scientific article published in January 2013

Side-Chain Losses in Electron Capture Dissociation To Improve Peptide Identification

scientific article published on 03 February 2007

Size-Dependent Hydrogen Atom Attachment to Gas-Phase Hydrogen-Deficient Polypeptide Radical Cations

scientific article published on 2 January 2018

Slight deuterium enrichment in water acts as an antioxidant: is deuterium a cell growth regulator?

scientific article published on 07 August 2020

Small-molecule inhibitor of OGG1 suppresses proinflammatory gene expression and inflammation

scientific article

SpotLight Proteomics-A IgG-Enrichment Phenotype Profiling Approach with Clinical Implications ⬇️

scientific article published on 01 May 2019

SpotLight Proteomics: uncovering the hidden blood proteome improves diagnostic power of proteomics

scientific article

Streptococcal Endo-β--Acetylglucosaminidase Suppresses Antibody-Mediated Inflammation

scientific article published on 16 July 2018

Structural Basis of Cross-Reactivity of Anti-Citrullinated Protein Antibodies

scientific article published on 04 January 2019

Subset of Kappa and Lambda Germline Sequences Result in Light Chains with a Higher Molecular Mass Phenotype

scientific article published on 24 November 2015

System-wide identification and prioritization of enzyme substrates by thermal analysis

scientific article published on 26 February 2021

Techview: biochemistry. Biomolecule mass spectrometry

scientific article

The RBCC gene RFP2 (Leu5) encodes a novel transmembrane E3 ubiquitin ligase involved in ERAD

scientific article

The Russian Mass Spectrometry Interest Group at ASMS: Over 20 Years of Science and Water Polo

scientific article published on 07 August 2019

The SysteMHC Atlas project

scientific article published on 29 July 2017

The challenge of the proteome dynamic range and its implications for in-depth proteomics ⬇️

scientific article published on March 1, 2013

The deubiquitinase inhibitor b-AP15 induces strong proteotoxic stress and mitochondrial damage

scientific article published on 25 August 2018

The effects of 5-fluorouracil on the proteome of colon cancer cells.

scientific article published on 21 March 2013

The exosome associates cotranscriptionally with the nascent pre-mRNP through interactions with heterogeneous nuclear ribonucleoproteins

scientific article published on 03 June 2009

The novel diagnostic biomarkers for focal segmental glomerulosclerosis

scientific article published on 26 March 2014

Toward a comprehensive characterization of the phosphotyrosine proteome.

scientific article published on 5 April 2011

Towards the standard-module approach to disulfide-linked polypeptide nanostructures. I. Methodological prerequisites and mass spectrometric characterization of the test two-loop structure.

scientific article

Two-dimensional mass spectrometry of biomolecules at the subfemtomole level.

scientific article

Two-fold efficiency increase by selective excitation of ions for consecutive activation by ion-electron reactions and vibrational excitation in tandem fourier transform ion cyclotron resonance mass spectrometry.

scientific article published in May 2005

Urinary prognostic biomarkers and classification of IgA nephropathy by high resolution mass spectrometry coupled with liquid chromatography

scientific article

Urinary prognostic biomarkers in patients with focal segmental glomerulosclerosis

scientific article

Use of models of biomacromolecule separation in AMT database generation for shotgun proteomics.

scientific article published in November 2009

Validation and development of MTH1 inhibitors for treatment of cancer.

scientific article

Vitamin D3 receptor polymorphisms regulate T cells and T cell-dependent inflammatory diseases

scientific article published on 21 September 2020

Zwitterionic states in gas-phase polypeptide ions revealed by 157-nm ultra-violet photodissociation

scientific article published on 01 October 2006

Paulina is supported by:

About Paulina

Help