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List of works by Matteo Chiara

A novel group of IncQ1 plasmids conferring multidrug resistance.

scientific article

A-GAME: improving the assembly of pooled functional metagenomics sequence data.

scientific article published on 12 January 2018

CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer.

scientific article published on 19 May 2017

CoVaCS: a consensus variant calling system

scientific article

Comparative Genomics of Listeria Sensu Lato: Genus-Wide Differences in Evolutionary Dynamics and the Progressive Gain of Complex, Potentially Pathogenicity-Related Traits through Lateral Gene Transfer.

scientific article

Comparative genomics suggests limited variability and similar evolutionary patterns between major clades of SARS-CoV-2

scientific article published on 02 April 2020

Complete vertebrate mitogenomes reveal widespread repeats and gene duplications

scientific article published on 29 April 2021

De novo assembly of the transcriptome of the non-model plant Streptocarpus rexii employing a novel heuristic to recover locus-specific transcript clusters

scientific article

Draft Genome Sequences of Six Listeria monocytogenes Strains Isolated from Dairy Products from a Processing Plant in Southern Italy

scientific article

Draft Genome Sequences of Three Novel Staphylococcus arlettae Strains Isolated from a Disused Biological Safety Cabinet

scientific article published on 04 October 2018

Draft genome sequence of Acinetobacter sp. neg1 capable of degrading ochratoxin A.

scientific article published on 18 January 2015

Draft genome sequence ofSphingobiumsp. strain ba1, resistant to kanamycin and nickel ions

scientific article published on 01 December 2014

Evaluation of Quality Assessment Protocols for High Throughput Genome Resequencing Data

scientific article

Gene coexpression patterns during early development of the native Arabidopsis reproductive meristem: novel candidate developmental regulators and patterns of functional redundancy

scientific article

Genome Sequencing of Multiple Isolates Highlights Subtelomeric Genomic Diversity within Fusarium fujikuroi

scientific article

Geographic Population Structure in Epstein-Barr Virus Revealed by Comparative Genomics

scientific article

IS26 mediated antimicrobial resistance gene shuffling from the chromosome to a mosaic conjugative FII plasmid

article

Lack of ApoA-I in ApoEKO Mice Causes Skin Xanthomas, Worsening of Inflammation, and Increased Coronary Atherosclerosis in the Absence of Hyperlipidemia

scientific article published in 2022

Large-scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing

scientific article published on 12 April 2010

Massive transcriptome sequencing of human spinal cord tissues provides new insights into motor neuron degeneration in ALS

scientific article published on 30 August 2017

Metagenomics Reveals Dysbiosis and a Potentially Pathogenic N. flavescens Strain in Duodenum of Adult Celiac Patients

scientific article

Mitochondrial and Nuclear DNA Variants in Amyotrophic Lateral Sclerosis: Enrichment in the Mitochondrial Control Region and Sirtuin Pathway Genes in Spinal Cord Tissue

scientific article published on 28 March 2024

No Change in the Mucosal Gut Microbiome is Associated With Celiac Disease-Specific Microbiome Alteration in Adult Patients

scientific article published in November 2016

Pilot study on circulating miRNA signature in children with obesity born small for gestational age and appropriate for gestational age

scientific article published on 29 August 2018

Role of the long non-coding RNA PVT1 in the dysregulation of the ceRNA-ceRNA network in human breast cancer

scientific article

SMRT long reads and Direct Label and Stain optical maps allow the generation of a high-quality genome assembly for the European barn swallow (Hirundo rustica rustica)

scientific article published on 01 January 2019

SVM²: an improved paired-end-based tool for the detection of small genomic structural variations using high-throughput single-genome resequencing data

scientific article

Staphylococcus arlettae Genomics: Novel Insights on Candidate Antibiotic Resistance and Virulence Genes in an Emerging Opportunistic Pathogen

scientific article published on 19 November 2019

Targeted resequencing of FECH locus reveals that a novel deep intronic pathogenic variant and eQTLs may cause erythropoietic protoporphyria (EPP) through a methylation-dependent mechanism

scientific article published on 05 July 2019

The Plant NF-Y DNA Matrix In Vitro and In Vivo

scientific article published on 10 October 2019

Tissue-specific mtDNA abundance from exome data and its correlation with mitochondrial transcription, mass and respiratory activity

scientific article

Transcriptomic analysis of nickel exposure in Sphingobium sp. ba1 cells using RNA-seq

scientific article published on 15 August 2017

UTRdb 2.0: a comprehensive, expert curated catalog of eukaryotic mRNAs untranslated regions

scientific article published on 18 November 2022

Whole transcriptome profiling of Late-Onset Alzheimer's Disease patients provides insights into the molecular changes involved in the disease.

scientific article published on 9 March 2018

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