List of works - Chun Jimmie Ye

A Genome-wide CRISPR Screen in Primary Immune Cells to Dissect Regulatory Networks ⬇️

scientific article published on 16 July 2015

Author Correction: lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements

scientific article published on 30 October 2020

Evaluation of SARS-CoV-2 serology assays reveals a range of test performance

scientific article published on 27 August 2020

Functional CRISPR dissection of gene networks controlling human regulatory T cell identity

scientific article published on 28 September 2020

Functional interpretation of single cell similarity maps

scientific article published on 26 September 2019

Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of transcripts under balancing selection

Genetic determinants of co-accessible chromatin regions in activated T cells across humans

scientific article published on 09 July 2018

Global Absence and Targeting of Protective Immune States in Severe COVID-19

scientific article published on 28 October 2020

Global Absence and Targeting of Protective Immune States in Severe COVID-19

scientific article published on 29 October 2020

Intersection of population variation and autoimmunity genetics in human T cell activation

scientific article published on September 2014

Lineage dynamics of murine pancreatic development at single-cell resolution

scientific article published in Nature Communications

On the cross-population generalizability of gene expression prediction models

scientific article published on 14 August 2020

Optimized design of single-cell RNA sequencing experiments for cell-type-specific eQTL analysis

scientific article published on 30 October 2020

Parsing the Interferon Transcriptional Network and Its Disease Associations

scientific article published on January 2016

Reconstructing the Molecular Function of Genetic Variation in Regulatory Networks

scientific article

SCITO-seq: single-cell combinatorial indexed cytometry sequencing

scientific article published on 05 August 2021

Selection and explosive growth alter genetic architecture and hamper the detection of causal rare variants

scientific article published on 18 May 2016

Single-cell RNA sequencing of Tocilizumab-treated peripheral blood mononuclear cells as an in vitro model of inflammation

scientific article published on 11 September 2020

Single-cell RNA-sequencing of peripheral blood mononuclear cells reveals widespread, context-specific gene expression regulation upon pathogenic exposure

scientific article published on 07 June 2022

The development and evolution of inhibitory neurons in primate cerebrum

scientific article

Transcriptomic analysis of immune cells in a multi-ethnic cohort of systemic lupus erythematosus patients identifies ethnicity- and disease-specific expression signatures

scientific article published on 21 April 2021

Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19

scientific article published on 24 August 2021

Ultrarare variants drive substantial cis heritability of human gene expression

scientific article published on 02 September 2019

lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements

scientific article published on 08 July 2020

List of works by Chun Jimmie Ye

A Genome-wide CRISPR Screen in Primary Immune Cells to Dissect Regulatory Networks ⬇️

Author Correction: lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements

Evaluation of SARS-CoV-2 serology assays reveals a range of test performance

Functional CRISPR dissection of gene networks controlling human regulatory T cell identity

Functional interpretation of single cell similarity maps

Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of transcripts under balancing selection

Genetic determinants of co-accessible chromatin regions in activated T cells across humans

Global Absence and Targeting of Protective Immune States in Severe COVID-19

Global Absence and Targeting of Protective Immune States in Severe COVID-19

Intersection of population variation and autoimmunity genetics in human T cell activation

Lineage dynamics of murine pancreatic development at single-cell resolution

On the cross-population generalizability of gene expression prediction models

Optimized design of single-cell RNA sequencing experiments for cell-type-specific eQTL analysis

Parsing the Interferon Transcriptional Network and Its Disease Associations

Reconstructing the Molecular Function of Genetic Variation in Regulatory Networks

SCITO-seq: single-cell combinatorial indexed cytometry sequencing

Selection and explosive growth alter genetic architecture and hamper the detection of causal rare variants

Single-cell RNA sequencing of Tocilizumab-treated peripheral blood mononuclear cells as an in vitro model of inflammation

Single-cell RNA-sequencing of peripheral blood mononuclear cells reveals widespread, context-specific gene expression regulation upon pathogenic exposure

The development and evolution of inhibitory neurons in primate cerebrum

Transcriptomic analysis of immune cells in a multi-ethnic cohort of systemic lupus erythematosus patients identifies ethnicity- and disease-specific expression signatures

Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19

Ultrarare variants drive substantial cis heritability of human gene expression

lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements