Advanced search

Authors whose works are in public domain in at least one jurisdiction

List of works by James Mullins

4E10-resistant HIV-1 isolated from four subjects with rare membrane-proximal external region polymorphisms

scientific article

A Haptically Enabled Low-Cost Reconnaissance Platform for Law Enforcement

A Pilot Study of Raltegravir Plus Combination Antiretroviral Therapy in Early Human Immunodeficiency Virus Infection: Challenges and Lessons Learned

scientific article published on January 2016

A human immune data-informed vaccine concept elicits strong and broad T-cell specificities associated with HIV-1 control in mice and macaques

scientific article

A reliable phenotype predictor for human immunodeficiency virus type 1 subtype C based on envelope V3 sequences

scientific article

A sensitive real-time PCR based assay to estimate the impact of amino acid substitutions on the competitive replication fitness of human immunodeficiency virus type 1 in cell culture ⬇️

scientific article published on November 29, 2012

A strategy for cloning infectious molecular clones of retroviruses from serum or plasma

scientific article

A study of vaccine-induced immune pressure on breakthrough infections in the Phambili phase 2b HIV-1 vaccine efficacy trial

scientific article

Acyclovir and transmission of HIV-1 from persons infected with HIV-1 and HSV-2.

scientific article

Additional member of the protein-tyrosine kinase family: the src- and lck-related protooncogene c-tkl

scientific article

Adhesion and fusion efficiencies of human immunodeficiency virus type 1 (HIV-1) surface proteins ⬇️

scientific article published on October 22, 2013

Alpha interferon (2b) in combination with zidovudine for the treatment of presymptomatic feline leukemia virus-induced immunodeficiency syndrome.

scientific article

Altered response hierarchy and increased T-cell breadth upon HIV-1 conserved element DNA vaccination in macaques

scientific article

Amino-acid co-variation in HIV-1 Gag subtype C: HLA-mediated selection pressure and compensatory dynamics

scientific article

Amplimers with 3'-terminal phosphorothioate linkages resist degradation by vent polymerase and reduce Taq polymerase mispriming

scientific article

An HIV epidemic model based on viral load dynamics: value in assessing empirical trends in HIV virulence and community viral load

scientific article

An increasing proportion of monotypic HIV-1 DNA sequences during antiretroviral treatment suggests proliferation of HIV-infected cells

scientific article published on 21 November 2012

Analysis of FeLV-FAIDS provirus burden and productive infection in lymphocyte subsets in vivo.

scientific article

Analysis of HLA A*02 association with vaccine efficacy in the RV144 HIV-1 vaccine trial

scientific article

Analysis of a Feline Immunodeficiency Virus Provirus Reveals Patterns of Gene Sequence Conservation Distinct from Human Immunodeficiency Virus Type 1 ⬇️

scientific article published on April 1, 1995

Anti-HIV type 1 memory cytotoxic T lymphocyte responses associated with changes in CD4+ T cell numbers in progression of HIV type 1 infection

scientific article published on 01 November 1998

Antibodies to Cell Membrane Antigens Associated with Human T-Cell Leukemia Virus in Patients with AIDS ⬇️

scientific article published on May 20, 1983

Antibodies to human T-cell leukemia virus membrane antigens (HTLV-MA) in hemophiliacs

scientific article published in September 1983

Antigen-specific cytokine responses in vaccinated Macaca nemestrina

scientific article published in August 1999

Association study of common genetic variants and HIV-1 acquisition in 6,300 infected cases and 7,200 controls

scientific article

Blood monocytes harbor HIV type 1 strains with diversified phenotypes including macrophage-specific CCR5 virus

scientific article published on January 2008

Breast milk and in utero transmission of HIV-1 select for envelope variants with unique molecular signatures

scientific article published on 26 January 2017

Broad and Gag-biased HIV-1 epitope repertoires are associated with lower viral loads

scientific article

CD39/adenosine pathway is involved in AIDS progression

scientific article

CD8 and CD4 epitope predictions in RV144: no strong evidence of a T-cell driven sieve effect in HIV-1 breakthrough sequences from trial participants.

scientific article

CD8+ T-cell responses to different HIV proteins have discordant associations with viral load

scientific article published on 17 December 2006

CTL responses of high functional avidity and broad variant cross-reactivity are associated with HIV control

scientific article (publication date: 2012)

Cells producing residual viremia during antiretroviral treatment appear to contribute to rebound viremia following interruption of treatment

scientific article published on 25 August 2020

Cellular gene expression upon human immunodeficiency virus type 1 infection of CD4(+)-T-cell lines

scientific article

Cellular immune responses and viral diversity in individuals treated during acute and early HIV-1 infection.

scientific article

Central role of reverting mutations in HLA associations with human immunodeficiency virus set point

scientific article published on 2 July 2008

Cervical human immunodeficiency virus type 1 shedding is associated with genital beta-chemokine secretion.

scientific article published on November 1998

Changes in human immunodeficiency virus type 1 fitness and genetic diversity during disease progression

scientific article published on July 2005

Characteristics of a pathogenic molecular clone of an end-stage serum-derived variant of simian immunodeficiency virus (SIV(F359)).

scientific article

Characterization and significance of delayed processing of the feline leukemia virus FeLV-FAIDS envelope glycoprotein

scientific article published on September 1990

China registers success with TB-diabetes screening initiative ⬇️

scientific article published on August 18, 2012

Clinical and immunological impact of HIV envelope V3 sequence variation after starting initial triple antiretroviral therapy

scientific article

Clonal Expansion of Human Immunodeficiency Virus-Infected Cells and Human Immunodeficiency Virus Persistence During Antiretroviral Therapy.

scientific article

Cloned genomic segments of Zea mays homologous to zein mRNAs ⬇️

scientific article published on 01 August 1981

Cloning of HTLV-4 and its relation to simian and human immunodeficiency viruses

scientific article published in April 1987

Coalescent estimates of HIV-1 generation time in vivo

scientific article (publication date: 2 March 1999)

Cohort reporting improves hypertension care for refugees

scientific article published on 01 August 2012

Colony forming T lymphocyte deficit in the development of feline retrovirus induced immunodeficiency syndrome

scientific article published in February 1989

Comment on "The origins of sexually transmitted HIV among men who have sex with men".

scientific article published on September 2010

Comparison of Major and Minor Viral SNPs Identified through Single Template Sequencing and Pyrosequencing in Acute HIV-1 Infection

scientific article published on 28 August 2015

Comparison of immunogen designs that optimize peptide coverage: reply to Fischer et al.

scientific article published on January 2008

Comparisons of Human Immunodeficiency Virus Type 1 Envelope Variants in Blood and Genital Fluids near the Time of Male-to-Female Transmission

scientific article published on 14 June 2019

Compartmentalization of HIV-1 within the female genital tract is due to monotypic and low-diversity variants not distinct viral populations

scientific article

Compartmentalization of human immunodeficiency virus type 1 between blood monocytes and CD4+ T cells during infection

scientific article published on August 2004

Compensatory Mutation Partially Restores Fitness and Delays Reversion of Escape Mutation within the Immunodominant HLA-B*5703-Restricted Gag Epitope in Chronic Human Immunodeficiency Virus Type 1 Infection

Compensatory mutation partially restores fitness and delays reversion of escape mutation within the immunodominant HLA-B*5703-restricted Gag epitope in chronic human immunodeficiency virus type 1 infection

scientific article

Complex Patterns of Protease Inhibitor Resistance among Antiretroviral Treatment-Experienced HIV-2 Patients from Senegal: Implications for Second-Line Therapy ⬇️

scientific article published on 09 April 2013

Composite Sequence-Structure Stability Models as Screening Tools for Identifying Vulnerable Targets for HIV Drug and Vaccine Development.

scientific article

Comprehensive epitope analysis of cross-clade Gag-specific T-cell responses in individuals with early HIV-1 infection in the US epidemic

scientific article published on 10 August 2006

Comprehensive sieve analysis of breakthrough HIV-1 sequences in the RV144 vaccine efficacy trial

scientific article

Conflicting selective forces affect T cell receptor contacts in an immunodominant human immunodeficiency virus epitope

scientific article

Consensus and Ancestral State HIV Vaccines

scientific article published in Science

Conserved HIV-1 epitopes continuously elicit subdominant cytotoxic T-lymphocyte responses

scientific article published on December 2009

Conserved V3 loop sequences and transmission of human immunodeficiency virus type 1.

scientific article published on December 1994

Consistent cytotoxic-T-lymphocyte targeting of immunodominant regions in human immunodeficiency virus across multiple ethnicities

scientific article published on March 2004

Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection

scientific article

Control of human immunodeficiency virus replication by cytotoxic T lymphocytes targeting subdominant epitopes

scientific article published on 20 December 2005

Control of human immunodeficiency virus type 1 is associated with HLA-B*13 and targeting of multiple gag-specific CD8+ T-cell epitopes

scientific article published on 24 January 2007

Coping with viral diversity in HIV vaccine design

scientific article

Correction: Comparison of Immunogen Designs That Optimize Peptide Coverage: Reply to Fischer et al.

scientific article published on 21 March 2008

Correction: Genomewide Association Study for Determinants of HIV-1 Acquisition and Viral Set Point in HIV-1 Serodiscordant Couples with Quantified Virus Exposure.

scientific article published on 17 January 2012

Correction: Whole genome sequencing of extreme phenotypes identifies variants in CD101 and UBE2V1 associated with increased risk of sexually acquired HIV-1

article

Correlation between phosphorylated H1 histones and satellite DNAs in Drosophila virilis ⬇️

scientific article published on February 1, 1978

Covariability of V3 loop amino acids.

scientific article published in October 1996

Coverage of primary mother-to-child HIV transmission isolates by second-generation broadly neutralizing antibodies

scientific article

Cross-reactivity to human T-lymphotropic virus type III/lymphadenopathy-associated virus and molecular cloning of simian T-cell lymphotropic virus type III from African green monkeys

scientific article published on December 1986

Curiously Modern DNA for a ``250 Million-Year-Old'' Bacterium ⬇️

scientific article published on January 1, 2002

Curtailing the AIDS Pandemic ⬇️

scientific article published on June 27, 1997

Cytopathicity of human immunodeficiency virus type 1 primary isolates depends on coreceptor usage and not patient disease status

scientific article

DIVEIN: a web server to analyze phylogenies, sequence divergence, diversity, and informative sites

scientific article

DNA Prime-Boost Vaccine Regimen To Increase Breadth, Magnitude, and Cytotoxicity of the Cellular Immune Responses to Subdominant Gag Epitopes of Simian Immunodeficiency Virus and HIV.

scientific article published on 12 October 2016

DNA Vaccine-Induced Long-Lasting Cytotoxic T Cells Targeting Conserved Elements of Human Immunodeficiency Virus Gag Are Boosted Upon DNA or Recombinant Modified Vaccinia Ankara Vaccination

scholarly article by Xintao Hu published in September 2018

DNA vaccines expressing conserved elements provide potent and broad immune responses

scientific article published on 13 September 2012

Decay of the HIV reservoir in patients receiving antiretroviral therapy for extended periods: implications for eradication of virus

scientific article

Definition of the viral targets of protective HIV-1-specific T cell responses

scientific article published on 7 December 2011

Demographic Processes Affect HIV-1 Evolution in Primary Infection before the Onset of Selective Processes ⬇️

scientific article published on May 18, 2011

Dendritic cells restore CD8+ T cell reactivity to autologous HIV-1

scientific article

Dendritic cells reveal a broad range of MHC class I epitopes for HIV-1 in persons with suppressed viral load on antiretroviral therapy

scientific article

Density-dependent decay in HIV-1 dynamics

scientific article published in March 2006

Development and testing of an inactivated feline leukemia virus vaccine

scientific article published in November 1995

Differences in the expressed HLA class I alleles effect the differential clustering of HIV type 1-specific T cell responses in infected Chinese and caucasians

scientific article published in May 2004

Differential selection pressure exerted on HIV by CTL targeting identical epitopes but restricted by distinct HLA alleles from the same HLA supertype

scientific article published in October 2006

Direct amplification and cloning of up to 5-kb lentivirus genomes from serum

scientific article published on 01 August 1996

Disease progression and viral genome variants in experimental feline leukemia virus-induced immunodeficiency syndrome

scientific article published on January 1, 1991

Disease-specific and tissue-specific production of unintegrated feline leukaemia virus variant DNA in feline AIDS.

scientific article

Distinct Determinants of Human Immunodeficiency Virus Type 1 RNA and DNA Loads in Vaginal and Cervical Secretions ⬇️

scientific article published on May 1, 1998

Distinct superinfection interference properties yet similar receptor utilization by cytopathic and noncytopathic feline leukemia viruses

scientific article published on September 1993

Distribution of HIV-1 subtypes seen in an AIDS clinic in Sao Paulo City, Brazil

scientific article

Divergent patterns of progression to AIDS after infection from the same source: human immunodeficiency virus type 1 evolution and antiviral responses

scientific article published in June 1997

Dominant influence of HLA-B in mediating the potential co-evolution of HIV and HLA.

scientific article published in December 2004

Dual HIV-1 infection associated with rapid disease progression

scientific article (publication date: 21 February 2004)

Dynamics of Viral Evolution and CTL Responses in HIV-1 Infection ⬇️

scientific article published on January 20, 2011

EVOLUTION OF INTRAHOST HIV-1 GENETIC DIVERSITY DURING CHRONIC INFECTION

article

Early pathogenesis of disease caused by SIVsmmPBj14 molecular clone 1.9 in macaques

scientific article published on March 1993

Early therapy of feline leukemia virus infection (FeLV-FAIDS) with 9-(2-phosphonylmethoxyethyl)adenine (PMEA)

scientific article (publication date: July 1991)

Effective Cytotoxic T Lymphocyte Targeting of Persistent HIV-1 during Antiretroviral Therapy Requires Priming of Naive CD8+ T Cells

scientific article published on 31 May 2016

Efficacy of an inactivated feline leukemia virus vaccine

scientific article published on March 1996

Efficient amplification of HIV half-genomes from tissue DNA ⬇️

scientific article published on September 25, 1992

Emergence of multiclass drug-resistance in HIV-2 in antiretroviral-treated individuals in Senegal: implications for HIV-2 treatment in resouce-limited West Africa

scientific article published on February 2009

Emerging genetic diversity of HIV-1 in South America.

scientific article published in August 2000

Enhanced detection of human immunodeficiency virus type 1 (HIV-1) Nef-specific T cells recognizing multiple variants in early HIV-1 infection

scientific article

Enhanced detection of human immunodeficiency virus type 1-specific T-cell responses to highly variable regions by using peptides based on autologous virus sequences

scientific article

Env length and N-linked glycosylation following transmission of human immunodeficiency virus Type 1 subtype B viruses

scientific article

Equal plasma viral loads predict a similar rate of CD4+ T cell decline in human immunodeficiency virus (HIV) type 1- and HIV-2-infected individuals from Senegal, West Africa

scientific article

Erratum for Smith et al., Effective Cytotoxic T Lymphocyte Targeting of Persistent HIV-1 during Antiretroviral Therapy Requires Priming of Naive CD8+ T Cells

scientific article published on 12 July 2016

Estimating the impact of plasma HIV-1 RNA reductions on heterosexual HIV-1 transmission risk

scientific article

Evidence for Human Immunodeficiency Virus Type 1 Replication In Vivo in CD14 + Monocytes and Its Potential Role as a Source of Virus in Patients on Highly Active Antiretroviral Therapy ⬇️

scientific article published on January 1, 2002

Evidence for limited genetic compartmentalization of HIV-1 between lung and blood

scientific article

Evidence that low-level viremias during effective highly active antiretroviral therapy result from two processes: expression of archival virus and replication of virus

scientific article

Evolution of CCR5 use before and during coreceptor switching

scientific article published on 24 September 2008

Evolution of Hepatitis C Virus Quasispecies in Hypervariable Region 1 and the Putative Interferon Sensitivity-Determining Region during Interferon Therapy and Natural Infection ⬇️

scientific article published on May 1, 1998

Evolution of a simian immunodeficiency virus pathogen.

scientific article published in January 1998

Evolution of human immunodeficiency virus type 1 cytotoxic T-lymphocyte epitopes: fitness-balanced escape

scientific article

Evolution of human immunodeficiency virus type 1 envelope sequences in infected individuals with differing disease progression profiles.

scientific article published in February 1998

Evolution of intrahost HIV-1 genetic diversity during chronic infection

scientific article published in June 2006

Evolutionary dynamics of HIV-1 and the control of AIDS.

scientific article

Evolutionary indicators of human immunodeficiency virus type 1 reservoirs and compartments

scientific article

Expanded Epitope Recognition by Vaccination with DNA Encoding Novel Immunogens Comprising HIV Conserved Elements

article

Experimental transmission and pathogenesis of immunodeficiency syndrome in cats

scientific article published on 01 December 1987

Extensive intrasubtype recombination in South African human immunodeficiency virus type 1 subtype C infections

scientific article published on 21 February 2007

Factors affecting relative fitness measurements in pairwise competition assays of human immunodeficiency viruses ⬇️

scientific article published on 08 August 2013

FeLV-FAIDS-induced immunodeficiency syndrome in cats

scientific article

Feline immunodeficiency virus cell entry

scientific article published on June 2001

Feline leukemia virus infection and diseases

scientific article published on November 15, 1991

Feline leukemia virus subgroup C phenotype evolves through distinct alterations near the N terminus of the envelope surface glycoprotein ⬇️

scientific article published on September 15, 1992

Feline leukemia virus-induced immunodeficiency syndrome in cats as a model for evaluation of antiretroviral therapy

scientific article published in January 1989

Fidelity of SNP array genotyping using Epstein Barr virus-transformed B-lymphocyte cell lines: implications for genome-wide association studies

scientific article

Fitness Costs of Mutations at the HIV-1 Capsid Hexamerization Interface ⬇️

scientific article published on June 13, 2013

Fitness cost of escape mutations in p24 Gag in association with control of human immunodeficiency virus type 1

scientific article

Fitness-Balanced Escape Determines Resolution of Dynamic Founder Virus Escape Processes in HIV-1 Infection.

scientific article

Founder Effects in the Assessment of HIV Polymorphisms and HLA Allele Associations

scientific article published in Science

Functional comparison of transactivation by simian immunodeficiency virus from rhesus macaques and human immunodeficiency virus type 1.

scientific article published on December 1988

Functional properties and epitope characteristics of T-cells recognizing natural HIV-1 variants

scientific article

Gag and env conserved element CE DNA vaccines elicit broad cytotoxic T cell responses targeting subdominant epitopes of HIV and SIV Able to recognize virus-infected cells in macaques

article

Generation and role of defective proviruses in cytopathic feline leukemia virus (FeLV-FAIDS) infections

scientific article published on January 1996

Genetic analyses of HIV-1 env sequences demonstrate limited compartmentalization in breast milk and suggest viral replication within the breast that increases with mastitis

scientific article

Genetic analysis of HIV-1 isolates from Brazil reveals presence of two distinct genetic subtypes

scientific article published in May 1994

Genetic analysis of human immunodeficiency virus type 1 and 2 (HIV-1 and HIV-2) mixed infections in India reveals a recent spread of HIV-1 and HIV-2 from a single ancestor for each of these viruses

scientific article published on April 1994

Genetic analysis of viral variants selected in transmission of human immunodeficiency viruses to newborns

scientific article published on September 2000

Genetic characterization of rebounding human immunodeficiency virus type 1 in plasma during multiple interruptions of highly active antiretroviral therapy

scientific article

Genetic diversity of feline immunodeficiency virus: dual infection, recombination, and distinct evolutionary rates among envelope sequence clades

scientific article published in June 1997

Genetic evaluation of suspected cases of transient HIV-1 infection of infants

scientific article published in May 1998

Genetic impact of vaccination on breakthrough HIV-1 sequences from the STEP trial ⬇️

scientific article published on February 27, 2011

Genetic relationships determined by a DNA heteroduplex mobility assay: analysis of HIV-1 env genes

scientific article

Genetic subtyping of human immunodeficiency virus using a heteroduplex mobility assay ⬇️

scientific article published on April 1, 1995

Genital HIV-1 RNA predicts risk of heterosexual HIV-1 transmission

scientific article

Genital tract human immunodeficiency virus type 1 (HIV-1) shedding and inflammation and HIV-1 env diversity in perinatal HIV-1 transmission

scientific article published in February 2000

Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure

scientific article

HIV Env conserved element DNA vaccine alters immunodominance in macaques

scientific article published on 5 July 2017

HIV Quasispecies and Resampling

scientific article published in Science

HIV Sequence Compendium 2018

article

HIV Transmission During Condomless Sex With a Seropositive Partner With Suppressed Infection.

scientific article

HIV latency. Proliferation of cells with HIV integrated into cancer genes contributes to persistent infection

scientific article

HIV population-level adaptation can rapidly diminish the impact of a partially effective vaccine.

scientific article

HIV pretreatment drug resistance among cisgender MSM and transgender women from Lima, Peru

scientific article published on 01 November 2019

HIV type 1 superinfection with a dual-tropic virus and rapid progression to AIDS: a case report.

scientific article published on 10 July 2007

HIV-1 Conserved-Element Vaccines: Relationship between Sequence Conservation and Replicative Capacity ⬇️

scientific article published on March 6, 2013

HIV-1 conserved elements p24CE DNA vaccine induces humoral immune responses with broad epitope recognition in macaques

scientific article

HIV-1 dynamics in children

scientific article published on 01 April 1999

HIV-1 envelope subregion length variation during disease progression

scientific article

HIV-1 group M conserved elements vaccine

scientific article

HIV-1 infections with multiple founders are associated with higher viral loads than infections with single founders

scientific article

HIV-1 over time: fitness loss or robustness gain?

article

HIV-1 p24(gag) derived conserved element DNA vaccine increases the breadth of immune response in mice

scientific article

HIV-1 selectively exploits cross-reactive CTL “help” to promote dysfunctional programming of pro-inflammatory dendritic cells

scientific article

HIV-1 subtype C is not associated with higher risk of heterosexual HIV-1 transmission: a multinational study among HIV-1 serodiscordant couples

scientific article

HIV-1 superinfection in the antiretroviral therapy era: are seroconcordant sexual partners at risk?

scientific article

HIV-1 superinfection with a triple-class drug-resistant strain in a patient successfully controlled with antiretroviral treatment

scientific article published on July 2014

HIV-1 variation before seroconversion in men who have sex with men: analysis of acute/early HIV infection in the multicenter AIDS cohort study

scientific article

HIV-2 integrase variation in integrase inhibitor-naïve adults in Senegal, West Africa

scientific article

HIV-infected individuals receiving effective antiviral therapy for extended periods of time continually replenish their viral reservoir

scientific article

HIV-specific probabilistic models of protein evolution

scientific article published on 6 June 2007

HLA class I-driven evolution of human immunodeficiency virus type 1 subtype c proteome: immune escape and viral load

scientific article published on 23 April 2008

Hematopoietic target cells of anemogenic subgroup C versus nonanemogenic subgroup A feline leukemia virus ⬇️

scientific article published on September 1, 1992

High-Sequence Diversity and Rapid Virus Turnover Contribute to Higher Rates of Coreceptor Switching in Treatment-Experienced Subjects with HIV-1 Viremia

scientific article published on 7 September 2016

Host genetic and viral determinants of HIV-1 RNA set point among HIV-1 seroconverters from sub-saharan Africa

scientific article

How often does treatment of primary HIV lead to post-treatment control?

scientific article published on 23 April 2015

Human Immunodeficiency Virus Type 1 Populations in Blood and Semen ⬇️

scientific article published on January 1, 1998

Human Immunodeficiency Virus Type 1 Subtype B Ancestral Envelope Protein Is Functional and Elicits Neutralizing Antibodies in Rabbits Similar to Those Elicited by a Circulating Subtype B Envelope

scientific article (publication date: 15 August 2005)

Human immunodeficiency virus in plasma and genital secretions during the menstrual cycle

scientific article published in October 1996

Human immunodeficiency virus type 1 bound to B cells: relationship to virus replicating in CD4+ T cells and circulating in plasma

scientific article

Human immunodeficiency virus type 1 env evolves toward ancestral states upon transmission to a new host.

scientific article

Human immunodeficiency virus type 1 env sequences from Calcutta in eastern India: identification of features that distinguish subtype C sequences in India from other subtype C sequences

scientific article

Human immunodeficiency virus type 1 evolution in vivo tracked by DNA heteroduplex mobility assays.

scientific article published on October 1994

Human immunodeficiency virus type 1 infection despite prior immunization with a recombinant envelope vaccine regimen

scientific article published on April 1996

Human immunodeficiency virus type 1 molecular evolution and the measure of selection

scientific article published in December 1996

Human immunodeficiency viruses appear compartmentalized to the female genital tract in cross-sectional analyses but genital lineages do not persist over time

scientific article published on 11 January 2013

ISDB: a database toolkit for storing and analyzing viral integration site data

scientific article published on 01 March 2019

Identification of a putative receptor for subgroup A feline leukemia virus on feline T cells ⬇️

scientific article published on June 1, 1992

Identification of an env G subtype and heterogeneity of HIV-1 strains in the Russian Federation and Belarus.

scientific article published in December 1994

Identification of human immunodeficiency virus type 1 envelope genes recombinant between subtypes B and F in two epidemiologically linked individuals from Brazil.

scientific article published on October 1994

Identification of low-level contamination of blood as basis for detection of human immunodeficiency virus (HIV) DNA in anti-HIV-negative specimens.

scientific article published in August 1994

Identification of three feline immunodeficiency virus (FIV) env gene subtypes and comparison of the FIV and human immunodeficiency virus type 1 evolutionary patterns

scientific article published on April 1994

Identifying and transferring offenders with mental health needs

scientific article published on November 14, 2012

Immunogen sequence: the fourth tier of AIDS vaccine design

scientific article

Impact of mutations in highly conserved amino acids of the HIV-1 Gag-p24 and Env-gp120 proteins on viral replication in different genetic backgrounds

scientific article

Importance and detection of virus reservoirs and compartments of HIV infection

scientific article

Improved coreceptor usage prediction and genotypic monitoring of R5-to-X4 transition by motif analysis of human immunodeficiency virus type 1 env V3 loop sequences

scientific article published on December 2003

Improved detection of rare HIV-1 variants using 454 pyrosequencing

scientific article

In vitro activity of dolutegravir against wild-type and integrase inhibitor-resistant HIV-2

scientific article

In vitro erythrocytopathic activity of an aplastic anemia-inducing feline retrovirus

scientific article

Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2

scientific article

Increased Sequence Coverage through Combined Targeting of Variant and Conserved Epitopes Correlates with Control of HIV Replication ⬇️

scientific article published on November 13, 2013

Increased breadth and depth of cytotoxic T lymphocytes responses against HIV-1-B Nef by inclusion of epitope variant sequences

scientific article (publication date: 28 March 2011)

Increased detection of HIV-specific T cell responses by combination of central sequences with comparable immunogenicity

article

Increased mutations in Env and Pol suggest greater HIV-1 replication in sputum-derived viruses compared with blood-derived viruses

scientific article published on May 2009

Indel and Carryforward Correction (ICC): a new analysis approach for processing 454 pyrosequencing data ⬇️

scientific article published on July 29, 2013

Induction of aplastic anemia by intra-bone marrow inoculation of a molecularly cloned feline retrovirus

scientific article published on January 1989

Inferring viral population structures using heteroduplex mobility and DNA sequence analyses ⬇️

scientific article published on August 29, 2013

Influence of random genetic drift on human immunodeficiency virus type 1 env evolution during chronic infection

scientific article published on March 2004

Interference with superinfection and with cell killing and determination of host range and growth kinetics mediated by feline leukemia virus surface glycoproteins.

scientific article published on July 1993

Is the virulence of HIV changing? A meta-analysis of trends in prognostic markers of HIV disease progression and transmission

scientific article

Lack of evidence for changing virulence of HIV-1 in North America.

scientific article

Lack of resistance to integrase inhibitors among antiretroviral-naive subjects with primary HIV-1 infection, 2007-2013

scientific article

Lack of viral control and development of combination antiretroviral therapy escape mutations in macaques after bone marrow transplantation

scientific article

Large-scale amplification, cloning and sequencing of near full-length HIV-1 subtype C genomes

scientific article published on 15 May 2006

Large-scale monitoring of host cell gene expression during HIV-1 infection using cDNA microarrays.

scientific article

Lethal mutagenesis of HIV by mutagenic ribonucleoside analogs

scientific article published on 01 January 2000

Lethal mutagenesis of HIV with mutagenic nucleoside analogs

scientific article

Longitudinal and cross-sectional studies of HIV-1 RNA and DNA loads in blood and the female genital tract

scientific article published on 01 December 2004

Lymphocyte subset alterations and viral determinants of immunodeficiency disease induction by the feline leukemia virus FeLV-FAIDS.

scientific article published on November 1990

MRKAd5 HIV-1 Gag/Pol/Nef vaccine-induced T-cell responses inadequately predict distance of breakthrough HIV-1 sequences to the vaccine or viral load

scientific article

Maintaining the integrity of human immunodeficiency virus sequence databases.

scientific article published in August 1996

Malawi breathes new life into childhood pneumonia care ⬇️

scientific article published on August 25, 2012

Male genital tract compartmentalization of human immunodeficiency virus type 1 (HIV).

scientific article published in April 2008

Mammalian cell/vaccinia virus expression vectors with increased stability of retroviral sequences in Escherichia coli: production of feline immunodeficiency virus envelope protein

scientific article published on February 1995

Methods used to examine compartmentalization of viral populations between the genital tract and peripheral blood

scientific article published in August 2007

Molecular analysis and pathogenesis of the feline aplastic anemia retrovirus, feline leukemia virus C-Sarma

scientific article published on October 1986

Molecular clock-like evolution of human immunodeficiency virus type 1.

scientific article

Molecular clones from a non-acutely pathogenic derivative of SIVsmmPBj14: characterization and comparison to acutely pathogenic clones

scientific article published on June 1, 1992

Molecular cloning and characterization of Antheraea mylitta cytoplasmic polyhedrosis virus genome segment 9.

scientific article published on June 2002

Molecular cloning and characterization of endogenous feline leukemia virus sequences from a cat genomic library ⬇️

scientific article published on June 1, 1983

Molecular cloning of a feline leukemia virus that induces fatal immunodeficiency disease in cats

scientific article

Molecular epidemiology of HIV transmission in a dental practice

scientific article published on May 22, 1992

Molecular epidemiology of dual HIV-1/HIV-2 seropositive adults from Senegal, West Africa

scientific article published in July 2003

Monotypic human immunodeficiency virus type 1 genotypes across the uterine cervix and in blood suggest proliferation of cells with provirus

scientific article published on April 2009

Mother-to-infant transmission of human immunodeficiency virus type 1 involving five envelope sequence subtypes

scientific article published in February 1997

Mucosal T helper 17 and T regulatory cell homeostasis correlates with acute SIV viremia and responsiveness to antiretroviral therapy in macaques

scientific article published on 02 January 2019

Multidrug-resistant human immunodeficiency virus type 1 strains resulting from combination antiretroviral therapy

scientific article

Multiple viral genetic analyses detect low-level human immunodeficiency virus type 1 replication during effective highly active antiretroviral therapy

scientific article

Multiple-cohort genetic association study reveals CXCR6 as a new chemokine receptor involved in long-term nonprogression to AIDS.

scientific article published on September 2010

Multistage genomewide association study identifies a locus at 1q41 associated with rate of HIV-1 disease progression to clinical AIDS.

scientific article

Mutation of HIV-1 Genomes in a Clinical Population Treated with the Mutagenic Nucleoside KP1461 ⬇️

scientific article published on January 14, 2011

Mutations based on viral decay acceleration in the HIV-1 genomes of a clinical population treated with the mutagenic nucleoside KP1461.

scientific article published on 3 October 2011

Natural history of SIVmac BK28 and H824 infection in Macaca nemestrina ⬇️

scientific article published on 01 April 1998

Nef induces multiple genes involved in cholesterol synthesis and uptake in human immunodeficiency virus type 1-infected T cells

scientific article

No evidence for recombination between HIV type 1 and HIV type 2 within the envelope region in dually seropositive individuals from Senegal.

scientific article

No time to delay! Fiebig stages and referral in acute HIV infection: Seattle Primary Infection Program Experience

scientific article published on 14 May 2018

Norovirus transmission on cruise ship

scientific article published on January 2005

Novel cytotoxic T-lymphocyte escape mutation by a three-amino-acid insertion in the human immunodeficiency virus type 1 p6Pol and p6Gag late domain associated with drug resistance

scientific article published on 17 October 2007

Nucleic acid sequence of an internal image-bearing monoclonal anti-idiotype and its comparison to the sequence of the external antigen

scientific article published on September 1986

Nucleotide Sequence of the Envelope Gene of Gardner-Arnstein Feline Leukemia Virus B Reveals Unique Sequence Homologies with a Murine Mink Cell Focus-Forming Virus ⬇️

scientific article published on June 1, 1983

Nucleotide sequences of a feline leukemia virus subgroup A envelope gene and long terminal repeat and evidence for the recombinational origin of subgroup B viruses

scientific article published on June 1986

OA01-06 LB. HIV-1 plasma RNA and risk of HIV-1 transmission

scientific article

OA06-06 LB. Evidence of vaccine-induced changes in breakthrough HIV-1 strains from the Step trial

article by M Rolland et al published 22 October 2009 in Retrovirology

P04-20. Humoral immune response in acute HIV-1 infection.

scientific article published on 22 October 2009

P07-06. HIV-1 transmission and early evolution: whole genome analysis

article

P09-18. Cw*0303/0304 HIV specific CTL response toward GagYL9 select for HIV escape variants with low fitness that is compensated by intra-codon variation

article

P12-09. Immune responses in controlled and uncontrolled HIV infection to a designed HIV immunogen sequence focused on conserved regions of the viral genome

article

P17-14. Fitness-informed HIV-1 Gag-p24 vaccine design

article

Pairwise growth competition assay for determining the replication fitness of human immunodeficiency viruses

scientific article

Partner characteristics predicting HIV-1 set point in sexually acquired HIV-1 among African seroconverters

scientific article published on January 2013

Pathogenic and host range determinants of the feline aplastic anemia retrovirus

scientific article

Pathogenic mechanisms of immunodeficiency syndrome and aplastic anemia induced by feline leukemia viruses

scientific article published on 01 January 1990

Patterns and rates of viral evolution in HIV-1 subtype B infected females and males

scientific article published on 18 October 2017

Performance of commonly used genotypic assays and comparison with phenotypic assays of HIV-1 coreceptor tropism in acutely HIV-1-infected patients

scientific article

Persistence of Extraordinarily Low Levels of Genetically Homogeneous Human Immunodeficiency Virus Type 1 in Exposed Seronegative Individuals ⬇️

scientific article published on June 1, 2003

Persistence of HIV in gut-associated lymphoid tissue despite long-term antiretroviral therapy

scientific article

Persistence of attenuated rev genes in a human immunodeficiency virus type 1-infected asymptomatic individual ⬇️

scientific article published on September 1, 1995

Persistence of low levels of simian immunodeficiency virus in macaques that were transiently viremic by conventional testing

scientific article published in June 2004

Pervasive genomic recombination of HIV-1 in vivo

scientific article

Phenotypic susceptibility of HIV-2 to raltegravir: integrase mutations Q148R and N155H confer raltegravir resistance.

scientific article published on November 2011

Photonic detection of bacterial pathogens in living hosts.

scientific article published in November 1995

Phylobook: a tool for display, clade annotation and extraction of sequences from molecular phylogenies

scientific article published on 10 May 2024

Phylogenetic Analyses Comparing HIV Sequences from Plasma at Virologic Failure to Cervix Versus Blood Sequences from Antecedent Antiretroviral Therapy Suppression

scientific article published on 30 April 2019

Phylogenetic analysis of population-based and deep sequencing data to identify coevolving sites in the nef gene of HIV-1.

scientific article

Phylogenetic dependency networks: inferring patterns of CTL escape and codon covariation in HIV-1 Gag.

scientific article

Plasma viral loads during early HIV-1 infection are similar in subtype C- and non-subtype C-infected African seroconverters

scientific article published on 11 January 2013

Polymorphisms of large effect explain the majority of the host genetic contribution to variation of HIV-1 virus load

scientific article

Position and degree of mismatches and the mobility of DNA heteroduplexes

scientific article published on June 2000

Posttranslational modifications distinguish the envelope glycoprotein of the immunodeficiency disease-inducing feline leukemia virus retrovirus

scientific article published on January 1989

Potential impact of recombination on sitewise approaches for detecting positive natural selection

scientific article published on 01 April 2003

Preclinical evaluation of HIV-1 therapeutic ex vivo dendritic cell vaccines expressing consensus Gag antigens and conserved Gag epitopes

scientific article

Predicting demographic group structures based on DNA sequence data

scientific article

Preferential detection of HIV subtype C' over subtype A in cervical cells from a dually infected woman

scientific article published on 01 June 2005

Preinfection human immunodeficiency virus (HIV)-specific cytotoxic T lymphocytes failed to prevent HIV type 1 infection from strains genetically unrelated to viruses in long-term exposed partners

scientific article published on 12 August 2009

Preparing for the availability of a partially effective HIV vaccine: Some lessons from other licensed vaccines ⬇️

scientific article published on July 13, 2011

Presence of multiple HIV subtypes and a high frequency of subtype chimeric viruses in heterosexually infected women

scientific article published in December 1999

Presenting plasma HIV RNA level and rate of CD4 T-cell decline

scientific article published in February 2007

Prevalence and genetic diversity of HIV type 1 subtypes A and D in women attending antenatal clinics in Uganda

scientific article published on May 2007

Primary subtype C HIV-1 infection in Harare, Zimbabwe

scientific article published on February 1999

Production of hepatitis B virus by a differentiated human hepatoma cell line after transfection with cloned circular HBV DNA.

scientific article published on October 1986

Protecting HIV databases

scientific article published in Nature

Protection against feline leukemia virus infection by use of an inactivated virus vaccine.

scientific article published in November 1991

Protection against lethal simian immunodeficiency virus SIVsmmPBj14 disease by a recombinant Semliki Forest virus gp160 vaccine and by a gp120 subunit vaccine

scientific article published in March 1996

Quality Score Based Identification and Correction of Pyrosequencing Errors ⬇️

scientific article published on September 5, 2013

Quantitation of target molecules from polymerase chain reaction-based limiting dilution assays

scientific article published in June 1997

Rapid genetic characterization of HIV type 1 strains from four World Health Organization-sponsored vaccine evaluation sites using a heteroduplex mobility assay. WHO Network for HIV Isolation and Characterization

scientific article

Rapid molecular epidemiology of human immunodeficiency virus transmission

scientific article published in September 1995

Rare HLA drive additional HIV evolution compared to more frequent alleles

scientific article published on March 2009

Rates of amino acid change in the envelope protein correlate with pathogenicity of primate lentiviruses

scientific article published in July 1993

Re: Follow-up study of intrahost HIV type 2 variability reveals discontinuous evolution of C2V3 sequences

scientific article published on 01 November 2001

Recognition of HIV-1 peptides by host CTL is related to HIV-1 similarity to human proteins

scientific article

Reconstruction and Function of Ancestral Center-of-Tree Human Immunodeficiency Virus Type 1 Proteins

scientific article (publication date: 30 May 2007)

Relationship between pre-existing viral reservoirs and the re-emergence of plasma viremia after discontinuation of highly active anti-retroviral therapy

scientific article

Replication kinetics and cell tropism of an immunosuppressive feline leukaemia virus

scientific article

Resistance detected by pyrosequencing following zidovudine monotherapy for prevention of HIV-1 mother-to-child-transmission

scientific article

Restriction of HIV-1 genotypes in breast milk does not account for the population transmission genetic bottleneck that occurs following transmission

scientific article

SIV adaption to human cells

scientific article published in Nature

SIVsmm infection of macaque and mangabey monkeys: correlation between in vivo and in vitro properties of different isolates.

scientific article

Sampling designs for HIV molecular epidemiology with application to Honduras

scientific article published on 01 November 2005

Satellite Ic: a possible link between the satellite DNAs of D. virilis and D. melanogaster ⬇️

scientific article published on July 1, 1979

Screening low-frequency SNPS from genome-wide association study reveals a new risk allele for progression to AIDS

scientific article

Selection against CpG dinucleotides in lentiviral genes: a possible role of methylation in regulation of viral expression

scientific article published in October 1990

Selection for human immunodeficiency virus type 1 recombinants in a patient with rapid progression to AIDS.

scientific article published on November 2002

Selection on the human immunodeficiency virus type 1 proteome following primary infection

scientific article

Selective impairment of humoral immunity in feline leukemia virus-induced immunodeficiency ⬇️

scientific article published on July 1, 1991

Selective induction of CTL helper rather than killer activity by natural epitope variants promotes dendritic cell-mediated HIV-1 dissemination

scientific article published on 2 August 2013

Sequence Note: Human Immunodeficiency Virus Type 1 Subtypes B and C Detected in New Zealand ⬇️

scientific article published on August 10, 1998

Sequence analysis and acute pathogenicity of molecularly cloned SIVSMM-PBj14.

scientific article published in June 1990

Sequence arrangement and biological activity of cloned feline leukemia virus proviruses from a virus-productive human cell line.

scientific article

Sequence organization of feline leukemis virus DNA in infected cells ⬇️

scientific article published on August 11, 1980

Should patients with drug-resistant HIV-1 continue to receive antiretroviral therapy?

scientific article published on 01 February 2001

Sieve analysis of breakthrough HIV-1 sequences in HVTN 505 identifies vaccine pressure targeting the CD4 binding site of Env-gp120.

scientific article published on 17 November 2017

Simian immunodeficiency virus DNA vaccine trial in macaques

scientific article published on 01 November 1995

Simian immunodeficiency virus DNA vaccine trial in macaques.

scientific article published in June 1996

Simian immunodeficiency virus displays complex patterns of RNA splicing.

scientific article published on September 1990

Simian immunodeficiency virus-specific cytotoxic T-lymphocyte induction through DNA vaccination of rhesus monkeys.

scientific article published in January 1996

Site-Directed Mutagenesis Facilitated by DpnI Selection on Hemimethylated DNA ⬇️

scientific article published on 01 January 2002

Site-directed mutagenesis using uracil-containing double-stranded DNA templates and DpnI digestion

scientific article published on 01 October 1999

Slower evolution of human immunodeficiency virus type 1 quasispecies during progression to AIDS ⬇️

scientific article published on October 1, 1997

Sources of variation in ancestral sequence reconstruction for HIV-1 envelope genes

scientific article published on January 2006

Spontaneous control of HIV-1 viremia in a subject with protective HLA-B plus HLA-C alleles and HLA-C associated single nucleotide polymorphisms.

scientific article

Strong sequence conservation among horizontally transmissible, minimally pathogenic feline leukemia viruses

scientific article published on March 1988

Structure and pathogenicity of individual variants within an immunodeficiency disease-inducing isolate of FeLV ⬇️

scientific article published on June 1, 1992

Structure, origin, and transforming activity of feline leukemia virus-myc recombinant provirus FTT

scientific article published on May 1989

Substitution Model of Sequence Evolution for the Human Immunodeficiency Virus Type 1 Subtype B gp120 Gene over the C2-V5 Region ⬇️

scientific article published on July 1, 2001

Superior control of HIV-1 replication by CD8+ T cells targeting conserved epitopes: implications for HIV vaccine design

scientific article

T-cell based sieve analysis ties HLA A*02 to vaccine efficacy and IgA-C1 immune correlate in RV144 Thai trial

scientific article published on 13 September 2012

Targeting of a CD8 T Cell Env Epitope Presented by HLA-B*5802 Is Associated with Markers of HIV Disease Progression and Lack of Selection Pressure

article

Testing the hypothesis of a recombinant origin of human immunodeficiency virus type 1 subtype E.

scientific article

The FeLV and SIV AIDS pathogenesis models: search for and analysis of molecularly defined pathogens

scientific article published on 01 January 1990

The U3 portion of feline leukemia virus DNA identifies horizontally acquired proviruses in leukemic cats ⬇️

scientific article published on December 1, 1981

The genome organization of STLV-3 is similar to that of the AIDS virus except for a truncated transmembrane protein

scientific article

The impact of viral evolution and frequency of variant epitopes on primary and memory human immunodeficiency virus type 1-specific CD8⁺ T cell responses

scientific article published on 20 December 2013

The role of feline leukaemia virus in naturally occurring leukaemias

scientific article published on January 1987

Therapeutic conserved elements (CE) DNA vaccine induces strong T-cell responses against highly conserved viral sequences during simian-human immunodeficiency virus infection.

scientific article published on 12 April 2018

Therapy of presymptomatic FeLV-induced immunodeficiency syndrome with AZT in combination with alpha interferon

scientific article published on 01 January 1990

Three main mutational pathways in HIV-2 lead to high-level raltegravir and elvitegravir resistance: implications for emerging HIV-2 treatment regimens

scientific article

Toll-like receptor polymorphism associations with HIV-1 outcomes among sub-Saharan Africans

scientific article published on 10 December 2013

Towards an HIV cure: a global scientific strategy

scientific article

Transcomplementation of simian immunodeficiency virus Rev with human T-cell leukemia virus type I Rex.

scientific article published on September 1993

Transduction of endogenous envelope genes by feline leukaemia virus in vitro

scientific article

Transmission and accumulation of CTL escape variants drive negative associations between HIV polymorphisms and HLA.

scientific article

Transmission of HIV-1 drug resistance mutations within partner-pairs: A cross-sectional study of a primary HIV infection cohort.

scientific article

Treatment of FeLV-induced immunodeficiency syndrome (FeLV-FAIDS) with controlled release capsular implantation of 2',3'-dideoxycytidine

scientific article published on 01 April 1989

V3 Region Polymorphisms in HIV-1 from Brazil: Prevalence of Subtype B Strains Divergent from North American/European Prototype and Detection of Subtype F ⬇️

scientific article published on May 1, 1994

Vaccine-induced Human Antibodies Specific for the Third Variable Region of HIV-1 gp120 Impose Immune Pressure on Infecting Viruses

scientific article

Validation of an oligonucleotide ligation assay for quantification of human immunodeficiency virus type 1 drug-resistant mutants by use of massively parallel sequencing

scientific article

Variable fitness impact of HIV-1 escape mutations to cytotoxic T lymphocyte (CTL) response

scientific article published in April 2009

Variants in host viral replication cycle genes are associated with heterosexual HIV-1 acquisition in Africans

scientific article

Viral Evolution and Escape during Acute HIV‐1 Infection ⬇️

scientific article published on October 15, 2010

Viral evolution and escape during primary human immunodeficiency virus-1 infection: implications for vaccine design.

scientific article

Viral genetic determinants of T-cell killing and immunodeficiency disease induction by the feline leukemia virus FeLV-FAIDS ⬇️

scientific article published on August 1, 1991

Viral linkage in HIV-1 seroconverters and their partners in an HIV-1 prevention clinical trial

scientific article

Viral transduction of c-myc gene in naturally occurring feline leukaemias ⬇️

scientific article published on May 26, 1984

ViroBLAST: a stand-alone BLAST web server for flexible queries of multiple databases and user's datasets

scientific article published on 22 June 2007

Virologic studies in a case of transfusion-associated AIDS.

scientific article published in November 1984

Virus population homogenization following acute human immunodeficiency virus type 1 infection

scientific article

Virus-specific CD8+ T-cell responses better define HIV disease progression than HLA genotype

scientific article

Waiting times for the appearance of cytotoxic T-lymphocyte escape mutants in chronic HIV-1 infection

scientific article

Whole genome sequencing of extreme phenotypes identifies variants in CD101 and UBE2V1 associated with increased risk of sexually acquired HIV-1.

scientific article published on 6 November 2017

Zidovudine in combination with alpha interferon and interleukin-2 as prophylactic therapy for FeLV-induced immunodeficiency syndrome (FeLV-FAIDS)

scientific article published on 01 January 1990

cDNA encoding a functional feline liver/bone/kidney-type alkaline phosphatase

scientific article published on September 1995

p21(WAF1/CIP1) RNA expression in highly HIV-1 exposed, uninfected individuals

scientific article

Paulina is supported by:

About Paulina

Help