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List of works by Steven W Wingett

Active and repressed biosynthetic gene clusters have spatially distinct chromosome states

scientific article published on 03 June 2020

CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data

scientific article

Capture Hi-C identifies putative target genes at 33 breast cancer risk loci.

scientific article published on 12 March 2018

Capturing Three-Dimensional Genome Organization in Individual Cells by Single-Cell Hi-C.

scientific article

Cell-cycle dynamics of chromosomal organization at single-cell resolution.

scientific article

Cellular responses to halofuginone reveal a vulnerability of the GCN2 branch of the integrated stress response

scientific article published on 25 April 2022

Chromosome contacts in activated T cells identify autoimmune disease candidate genes

scientific article published on 4 September 2017

Chromosome contacts in activated T cells identify autoimmune disease candidate genes

article

Comparison of Hi-C results using in-solution versus in-nucleus ligation

scientific article published on 26 August 2015

Detecting chromosomal interactions in Capture Hi-C data with CHiCAGO and companion tools

scientific article published on 09 August 2021

Dynamic Rewiring of Promoter-Anchored Chromatin Loops during Adipocyte Differentiation

scientific article published on May 2017

FastQ Screen: A tool for multi-genome mapping and quality control

Global reorganisation of cis-regulatory units upon lineage commitment of human embryonic stem cells.

scientific article published on 23 March 2017

Global reorganization of the nuclear landscape in senescent cells

scientific article

Hi-C as a tool for precise detection and characterisation of chromosomal rearrangements and copy number variation in human tumours

scientific article

HiCUP: pipeline for mapping and processing Hi-C data

scientific article

Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters

scientific article

Lineage-specific dynamic and pre-established enhancer-promoter contacts cooperate in terminal differentiation.

scientific article published on 14 August 2017

Long-Range Enhancer Interactions Are Prevalent in Mouse Embryonic Stem Cells and Are Reorganized upon Pluripotent State Transition.

scientific article published in March 2018

Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C.

scientific article published on 4 May 2015

Neuronal HSF-1 coordinates the propagation of fat desaturation across tissues to enable adaptation to high temperatures in C. elegans

scientific article published on 01 November 2021

Platelet function is modified by common sequence variation in megakaryocyte super enhancers

scientific article

Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome

scientific article published on 31 August 2015

Promoter Capture Hi-C: High-resolution, Genome-wide Profiling of Promoter Interactions

scientific article published on 28 June 2018

Promoter interactome of human embryonic stem cell-derived cardiomyocytes connects GWAS regions to cardiac gene networks.

scientific article

RNA proximity sequencing data and analysis pipeline from a human neuroblastoma nuclear transcriptome

scientific article published on 28 January 2020

RNA proximity sequencing reveals the spatial organization of the transcriptome in the nucleus

scientific article published on 01 July 2019

Single-cell Hi-C for genome-wide detection of chromatin interactions that occur simultaneously in a single cell.

scientific article

The adjuvant GLA-SE promotes human Tfh cell expansion and emergence of public TCRβ clonotypes

scientific article published on 07 June 2019

The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements.

scientific article published on 9 March 2015

The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia

scientific article published on 21 May 2018

Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C.

scientific article

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