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List of works by Justin B Kinney

A systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria

An Index for 4 Dimensional Super Conformal Theories

Comparison of the theoretical and real-world evolutionary potential of a genetic circuit

scientific article

Deciphering the regulatory genome of Escherichia coli, one hundred promoters at a time

scientific article published on 21 September 2020

Discovery of cancer drug targets by CRISPR-Cas9 screening of protein domains

scientific article published on 11 May 2015

Domain within the helicase subunit Mcm4 integrates multiple kinase signals to control DNA replication initiation and fork progression

scientific article

Energy-dependent fitness: a quantitative model for the evolution of yeast transcription factor binding sites

scholarly article

Equitability, mutual information, and the maximal information coefficient

scientific article

Estimation of probability densities using scale-free field theories

scientific article published on 11 July 2014

Evolution of DNA replication origin specification and gene silencing mechanisms

scientific article published on 14 October 2020

Higher-order epistasis and phenotypic prediction

scientific article published in 2022

MPAthic: quantitative modeling of sequence-function relationships for massively parallel assays

article

Measuring cis-regulatory energetics in living cells using allelic manifolds.

scientific article

Measuring the sequence-affinity landscape of antibodies with massively parallel titration curves ⬇️

scientific article published on 30 December 2016

Modeling multi-particle complexes in stochastic chemical systems

Modeling of gravity-wave tail spectra in the middle atmosphere via numerical and Doppler-spread methods

Parametric inference in the large data limit using maximally informative models

scientific article

Precise physical models of protein-DNA interaction from high-throughput data

scientific article

Reply to Murrell et al.: Noise matters

scientific article published on May 2014

Reply to Reshef et al.: Falsifiability or bust

scientific article published on August 2014

Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay

scientific article

Unification of field theory and maximum entropy methods for learning probability densities ⬇️

scientific article

Using deep sequencing to characterize the biophysical mechanism of a transcriptional regulatory sequence

scientific article

r-modes in accreting neutron stars with magnetoviscous boundary layers

scholarly article

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