List of works - Xi Chen

A rapid and robust method for single cell chromatin accessibility profiling

scientific article published in Nature Communications

Deregulation of the FOXM1 target gene network and its coregulatory partners in oesophageal adenocarcinoma

scientific article

Establishment of mouse expanded potential stem cells.

scientific article

Establishment of porcine and human expanded potential stem cells

scientific article published on 03 June 2019

Gene expression variability across cells and species shapes innate immunity

scientific article published in Nature

Genetics and immunity in the era of single-cell genomics

scientific article

Genome-wide CRISPR Screens in T Helper Cells Reveal Pervasive Crosstalk between Activation and Differentiation

Genome-wide Interrogation of Protein-DNA Interactions in Mammalian Cells Using ChIPmentation

scientific article published on 04 December 2020

Genome-wide analyses reveal the IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation

scientific article published on 24 October 2018

Genome-wide binding studies reveal DNA binding specificity mechanisms and functional interplay amongst Forkhead transcription factors

scientific article

Screen for multi-SUMO-binding proteins reveals a multi-SIM-binding mechanism for recruitment of the transcriptional regulator ZMYM2 to chromatin.

scientific article

Single cell RNA-seq and ATAC-seq analysis of cardiac progenitor cell transition states and lineage settlement

scientific article published in Nature Communications

Single-Cell RNA Sequencing Reveals a Dynamic Stromal Niche That Supports Tumor Growth

scientific article published on 01 May 2020

Single-Cell Transcriptomics of Regulatory T Cells Reveals Trajectories of Tissue Adaptation

scholarly article by Ricardo J Miragaia et al published 19 February 2019 in Immunity

Single-cell RNA-seq identifies a PD-1hi ILC progenitor and defines its development pathway

scientific article published on 29 September 2016

Single-cell analysis at the threshold

scientific article

The BAF and PRC2 Complex Subunits Dpf2 and Eed Antagonistically Converge on Tbx3 to Control ESC Differentiation

The forkhead transcription factor FOXM1 controls cell cycle-dependent gene expression through an atypical chromatin binding mechanism.

scientific article published on 29 October 2012

Transcriptome dynamics of CD4+ T cells during malaria maps gradual transit from effector to memory

scientific article published on 12 October 2020

Transporting ESCs in FBS at ambient temperature

scientific article published on 24 September 2020

Tumors induce de novo steroid biosynthesis in T cells to evade immunity

scientific article published on 17 July 2020

dbInDel: a database of enhancer-associated insertion and deletion variants by analysis of H3K27ac ChIP-Seq

scientific article published on 01 March 2020

List of works by Xi Chen

A rapid and robust method for single cell chromatin accessibility profiling

A rapid and robust method for single cell chromatin accessibility profiling

Deregulation of the FOXM1 target gene network and its coregulatory partners in oesophageal adenocarcinoma

Establishment of mouse expanded potential stem cells.

Establishment of porcine and human expanded potential stem cells

Gene expression variability across cells and species shapes innate immunity

Genetics and immunity in the era of single-cell genomics

Genome-wide CRISPR Screens in T Helper Cells Reveal Pervasive Crosstalk between Activation and Differentiation

Genome-wide Interrogation of Protein-DNA Interactions in Mammalian Cells Using ChIPmentation

Genome-wide analyses reveal the IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation

Genome-wide binding studies reveal DNA binding specificity mechanisms and functional interplay amongst Forkhead transcription factors

Screen for multi-SUMO-binding proteins reveals a multi-SIM-binding mechanism for recruitment of the transcriptional regulator ZMYM2 to chromatin.

Single cell RNA-seq and ATAC-seq analysis of cardiac progenitor cell transition states and lineage settlement

Single-Cell RNA Sequencing Reveals a Dynamic Stromal Niche That Supports Tumor Growth

Single-Cell Transcriptomics of Regulatory T Cells Reveals Trajectories of Tissue Adaptation

Single-cell RNA-seq identifies a PD-1hi ILC progenitor and defines its development pathway

Single-cell analysis at the threshold

The BAF and PRC2 Complex Subunits Dpf2 and Eed Antagonistically Converge on Tbx3 to Control ESC Differentiation

The forkhead transcription factor FOXM1 controls cell cycle-dependent gene expression through an atypical chromatin binding mechanism.

Transcriptome dynamics of CD4+ T cells during malaria maps gradual transit from effector to memory

Transporting ESCs in FBS at ambient temperature

Tumors induce de novo steroid biosynthesis in T cells to evade immunity

dbInDel: a database of enhancer-associated insertion and deletion variants by analysis of H3K27ac ChIP-Seq