List of works - David R. Cooper

A multi-faceted analysis of RutD reveals a novel family of α/β hydrolases

scientific article

A public database of macromolecular diffraction experiments

scientific article

Albumin-based transport of non-steroidal anti-inflammatory drugs in mammalian blood plasma

scientific article published on 29 May 2020

CheckMyMetal: a macromolecular metal-binding validation tool

scientific article

Covid-19.bioreproducibility.org: A web resource for SARS-CoV-2-related structural models

scientific article published on 27 September 2020

Databases, Repositories, and Other Data Resources in Structural Biology

scientific article

Differences in substrate specificity of V. cholerae FabH enzymes suggest new approaches for the development of novel antibiotics and biofuels

article

Harvesting the high-hanging fruit: the structure of the YdeN gene product from Bacillus subtilis at 1.8 angstroms resolution

scientific article

Molecular determinants of vascular transport of dexamethasone in COVID-19 therapy

scientific article published on 23 July 2020

Molecular determinants of vascular transport of dexamethasone in COVID-19 therapy

scientific article published on 29 September 2020

Molecular roots of degenerate specificity in syntenin's PDZ2 domain: reassessment of the PDZ recognition paradigm

scientific article

Molstack - interactive visualization tool for presentation, interpretation, and validation of macromolecules and electron density maps

scientific article

Optimal structure determination from sub-optimal diffraction data

scientific article published in January 2022

PDZ tandem of human syntenin: crystal structure and functional properties

scientific article (publication date: April 2003)

Protein crystallization by surface entropy reduction: optimization of the SER strategy

scientific article

Pyrimidine biosynthesis in pathogens - Structures and analysis of dihydroorotases from Yersinia pestis and Vibrio cholerae

scientific article published on 15 June 2019

Rapid response to emerging biomedical challenges and threats

State-of-the-Art Data Management: Improving the Reproducibility, Consistency, and Traceability of Structural Biology and in Vitro Biochemical Experiments

scientific article published on 01 January 2021

Structural and biochemical analysis of Bacillus anthracis prephenate dehydrogenase reveals an unusual mode of inhibition by tyrosine via the ACT domain

scientific article published on 21 November 2019

Structure and function of Bacillus subtilis YphP, a prokaryotic disulfide isomerase with a CXC catalytic motif

scientific article

Structure of Escherichia coli RutC, a member of the YjgF family and putative aminoacrylate peracid reductase of the rut operon

scientific article

Structure of Thermotoga maritima TM0439: implications for the mechanism of bacterial GntR transcription regulators with Zn2+-binding FCD domains

scientific article

Structure of a short-chain dehydrogenase/reductase from Bacillus anthracis

scientific article

Structure of the Bacillus subtilis OhrB hydroperoxide-resistance protein in a fully oxidized state

scientific article

Structure-based design approach to rational site-directed mutagenesis of β-lactoglobulin

scientific article published on 10 March 2020

The DC-module of doublecortin: dynamics, domain boundaries, and functional implications

scientific article

The Integrated Resource for Reproducibility in Macromolecular Crystallography: Experiences of the first four years

scientific article published on 22 November 2019

The crystal structure of the reduced, Zn2+-bound form of the B. subtilis Hsp33 chaperone and its implications for the activation mechanism

scientific article

The structure and ligand binding properties of the B. subtilis YkoF gene product, a member of a novel family of thiamin/HMP-binding proteins

scientific article

The structure of DinB from Geobacillus stearothermophilus: a representative of a unique four-helix-bundle superfamily

scientific article

The structure of the FERM domain of merlin, the neurofibromatosis type 2 gene product

scientific article

The structure of the N-terminal domain of the product of the lissencephaly gene Lis1 and its functional implications

scientific article

The structure of the coiled-coil domain of Ndel1 and the basis of its interaction with Lis1, the causal protein of Miller-Dieker lissencephaly

scientific article

Toward rational protein crystallization: A Web server for the design of crystallizable protein variants

scientific article

Validation of metal-binding sites in macromolecular structures with the CheckMyMetal web server.

scientific article

X-ray crystallography: Assessment and validation of protein-small molecule complexes for drug discovery

scientific article

virusMED: an atlas of hotspots of viral proteins

scientific article published on 28 September 2021

List of works by David R. Cooper

A multi-faceted analysis of RutD reveals a novel family of α/β hydrolases

A public database of macromolecular diffraction experiments

Albumin-based transport of non-steroidal anti-inflammatory drugs in mammalian blood plasma

CheckMyMetal: a macromolecular metal-binding validation tool

Covid-19.bioreproducibility.org: A web resource for SARS-CoV-2-related structural models

Databases, Repositories, and Other Data Resources in Structural Biology

Differences in substrate specificity of V. cholerae FabH enzymes suggest new approaches for the development of novel antibiotics and biofuels

Harvesting the high-hanging fruit: the structure of the YdeN gene product from Bacillus subtilis at 1.8 angstroms resolution

Molecular determinants of vascular transport of dexamethasone in COVID-19 therapy

Molecular determinants of vascular transport of dexamethasone in COVID-19 therapy

Molecular roots of degenerate specificity in syntenin's PDZ2 domain: reassessment of the PDZ recognition paradigm

Molstack - interactive visualization tool for presentation, interpretation, and validation of macromolecules and electron density maps

Optimal structure determination from sub-optimal diffraction data

PDZ tandem of human syntenin: crystal structure and functional properties

Protein crystallization by surface entropy reduction: optimization of the SER strategy

Pyrimidine biosynthesis in pathogens - Structures and analysis of dihydroorotases from Yersinia pestis and Vibrio cholerae

Rapid response to emerging biomedical challenges and threats

State-of-the-Art Data Management: Improving the Reproducibility, Consistency, and Traceability of Structural Biology and in Vitro Biochemical Experiments

Structural and biochemical analysis of Bacillus anthracis prephenate dehydrogenase reveals an unusual mode of inhibition by tyrosine via the ACT domain

Structure and function of Bacillus subtilis YphP, a prokaryotic disulfide isomerase with a CXC catalytic motif

Structure of Escherichia coli RutC, a member of the YjgF family and putative aminoacrylate peracid reductase of the rut operon

Structure of Thermotoga maritima TM0439: implications for the mechanism of bacterial GntR transcription regulators with Zn2+-binding FCD domains

Structure of a short-chain dehydrogenase/reductase from Bacillus anthracis

Structure of the Bacillus subtilis OhrB hydroperoxide-resistance protein in a fully oxidized state

Structure-based design approach to rational site-directed mutagenesis of β-lactoglobulin

The DC-module of doublecortin: dynamics, domain boundaries, and functional implications

The Integrated Resource for Reproducibility in Macromolecular Crystallography: Experiences of the first four years

The crystal structure of the reduced, Zn2+-bound form of the B. subtilis Hsp33 chaperone and its implications for the activation mechanism

The structure and ligand binding properties of the B. subtilis YkoF gene product, a member of a novel family of thiamin/HMP-binding proteins

The structure of DinB from Geobacillus stearothermophilus: a representative of a unique four-helix-bundle superfamily

The structure of the FERM domain of merlin, the neurofibromatosis type 2 gene product

The structure of the N-terminal domain of the product of the lissencephaly gene Lis1 and its functional implications

The structure of the coiled-coil domain of Ndel1 and the basis of its interaction with Lis1, the causal protein of Miller-Dieker lissencephaly

Toward rational protein crystallization: A Web server for the design of crystallizable protein variants

Validation of metal-binding sites in macromolecular structures with the CheckMyMetal web server.

X-ray crystallography: Assessment and validation of protein-small molecule complexes for drug discovery

virusMED: an atlas of hotspots of viral proteins