List of works - Arun Kommadath

Bioinformatic analyses in early host response to Porcine Reproductive and Respiratory Syndrome virus (PRRSV) reveals pathway differences between pigs with alternate genotypes for a major host response QTL

scientific article

Central genomic regulation of the expression of oestrous behaviour in dairy cows: a review

scientific article published on 06 March 2014

Development of a Novel Mule Deer Genomic Assembly and Species-Diagnostic SNP Panel for Assessing Introgression in Mule Deer, White-Tailed Deer, and Their Interspecific Hybrids

article

Differences in Whole Blood Gene Expression Associated with Infection Time-Course and Extent of Fetal Mortality in a Reproductive Model of Type 2 Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) Infection

scientific article

Evaluation of RNA quality and functional transcriptome of beef longissimus thoracis over time post-mortem

scientific article published on 25 May 2021

Expansion of ruminant-specific microRNAs shapes target gene expression divergence between ruminant and non-ruminant species

scientific article

Gene co-expression network analysis identifies porcine genes associated with variation in Salmonella shedding

scientific article

Gene coexpression network analysis identifies genes and biological processes shared among anterior pituitary and brain areas that affect estrous behavior in dairy cows.

scientific article published on 30 January 2013

Gene expression patterns in anterior pituitary associated with quantitative measure of oestrous behaviour in dairy cows.

scientific article published on August 2010

Gene expression patterns in four brain areas associate with quantitative measure of estrous behavior in dairy cows

scientific article

Genetic architecture of gene expression underlying variation in host response to porcine reproductive and respiratory syndrome virus infection.

scientific article published on 10 April 2017

Genome-wide whole blood microRNAome and transcriptome analyses reveal miRNA-mRNA regulated host response to foodborne pathogen Salmonella infection in swine.

scientific article published on 31 July 2015

Globaltest and GOEAST: two different approaches for Gene Ontology analysis

scientific article

High confidence copy number variants identified in Holstein dairy cattle from whole genome sequence and genotype array data

scientific article published on 15 May 2020

Identification of a putative quantitative trait nucleotide in guanylate binding protein 5 for host response to PRRS virus infection

scientific article published on 28 May 2015

Increasing gene discovery and coverage using RNA-seq of globin RNA reduced porcine blood samples.

scientific article

Methods for interpreting lists of affected genes obtained in a DNA microarray experiment

scientific article (2009)

MicroRNA buffering and altered variance of gene expression in response to Salmonella infection

scientific article

Mining for single nucleotide polymorphisms in pig genome sequence data

scientific article

Novel Insights into the Pig Gut Microbiome Using Metagenome-Assembled Genomes

scientific article published in 2022

Regional regulation of transcription in the bovine genome.

scientific article published on 3 June 2011

List of works by Arun Kommadath

Bioinformatic analyses in early host response to Porcine Reproductive and Respiratory Syndrome virus (PRRSV) reveals pathway differences between pigs with alternate genotypes for a major host response QTL

Central genomic regulation of the expression of oestrous behaviour in dairy cows: a review

Development of a Novel Mule Deer Genomic Assembly and Species-Diagnostic SNP Panel for Assessing Introgression in Mule Deer, White-Tailed Deer, and Their Interspecific Hybrids

Differences in Whole Blood Gene Expression Associated with Infection Time-Course and Extent of Fetal Mortality in a Reproductive Model of Type 2 Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) Infection

Evaluation of RNA quality and functional transcriptome of beef longissimus thoracis over time post-mortem

Expansion of ruminant-specific microRNAs shapes target gene expression divergence between ruminant and non-ruminant species

Gene co-expression network analysis identifies porcine genes associated with variation in Salmonella shedding

Gene coexpression network analysis identifies genes and biological processes shared among anterior pituitary and brain areas that affect estrous behavior in dairy cows.

Gene expression patterns in anterior pituitary associated with quantitative measure of oestrous behaviour in dairy cows.

Gene expression patterns in four brain areas associate with quantitative measure of estrous behavior in dairy cows

Genetic architecture of gene expression underlying variation in host response to porcine reproductive and respiratory syndrome virus infection.

Genome-wide whole blood microRNAome and transcriptome analyses reveal miRNA-mRNA regulated host response to foodborne pathogen Salmonella infection in swine.

Globaltest and GOEAST: two different approaches for Gene Ontology analysis

High confidence copy number variants identified in Holstein dairy cattle from whole genome sequence and genotype array data

Identification of a putative quantitative trait nucleotide in guanylate binding protein 5 for host response to PRRS virus infection

Increasing gene discovery and coverage using RNA-seq of globin RNA reduced porcine blood samples.

Methods for interpreting lists of affected genes obtained in a DNA microarray experiment

MicroRNA buffering and altered variance of gene expression in response to Salmonella infection

Mining for single nucleotide polymorphisms in pig genome sequence data

Novel Insights into the Pig Gut Microbiome Using Metagenome-Assembled Genomes

Regional regulation of transcription in the bovine genome.