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List of works by Belinda Phipson

3D organoid-derived human glomeruli for personalised podocyte disease modelling and drug screening

scientific article published in Nature Communications

A cross-package Bioconductor workflow for analysing methylation array data

scientific article

A recombination hotspot leads to sequence variability within a novel gene (AK005651) and contributes to type 1 diabetes susceptibility

scientific article published on 4 November 2010

Aire regulates the transfer of antigen from mTECs to dendritic cells for induction of thymic tolerance.

scientific article published on 19 April 2011

Bcl-2, Bcl-x(L), and Bcl-w are not equivalent targets of ABT-737 and navitoclax (ABT-263) in lymphoid and leukemic cells

scientific article

DiffVar: a new method for detecting differential variability with application to methylation in cancer and aging

scientific article

Differentiation of human embryonic stem cells to HOXA+ hemogenic vasculature that resembles the aorta-gonad-mesonephros.

scientific article published on 17 October 2016

Early lineage priming by trisomy of Erg leads to myeloproliferation in a Down syndrome model

scientific article published on 14 May 2015

Evaluation of variability in human kidney organoids

scientific article published on 20 December 2018

Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database

article

Functionally distinct roles for different miR-155 expression levels through contrasting effects on gene expression, in acute myeloid leukaemia

scientific article published on 14 October 2016

Gene length and detection bias in single cell RNA sequencing protocols

scientific article

Gene set enrichment analysis for genome-wide DNA methylation data

scientific article published on 08 June 2021

Haploinsufficiency for the Six2 gene increases nephron progenitor proliferation promoting branching and nephron number

scientific article published on 4 December 2017

MOZ (MYST3, KAT6A) inhibits senescence via the INK4A-ARF pathway.

scientific article published on 16 March 2015

MOZ and BMI1 play opposing roles during Hox gene activation in ES cells and in body segment identity specification in vivo

scientific article published on 14 April 2015

Maximal killing of lymphoma cells by DNA damage-inducing therapy requires not only the p53 targets Puma and Noxa, but also Bim

scientific article

Molecular dissection of the pea shoot apical meristem

scientific article

Murine hematopoietic blast colony-forming cells and their progeny have distinctive membrane marker profiles

scientific article published on 23 October 2009

Neither loss of Bik alone, nor combined loss of Bik and Noxa, accelerate murine lymphoma development or render lymphoma cells resistant to DNA damaging drugs

scientific article

Opposing roles of polycomb repressive complexes in hematopoietic stem and progenitor cells

scientific article published on 5 May 2010

Patient-iPSC-Derived Kidney Organoids Show Functional Validation of a Ciliopathic Renal Phenotype and Reveal Underlying Pathogenetic Mechanisms

Permutation P-values should never be zero: calculating exact P-values when permutations are randomly drawn ⬇️

scientific article published on October 31, 2010

Polycomb repressive complex 2 (PRC2) suppresses Eμ-myc lymphoma.

scientific article

Pro-inflammatory CD11c+CD206+ adipose tissue macrophages are associated with insulin resistance in human obesity ⬇️

scientific article

ROBUST HYPERPARAMETER ESTIMATION PROTECTS AGAINST HYPERVARIABLE GENES AND IMPROVES POWER TO DETECT DIFFERENTIAL EXPRESSION. ⬇️

scientific article published on June 2016

STRetch: detecting and discovering pathogenic short tandem repeat expansions

scientific article published on 21 August 2018

STRetch: detecting and discovering pathogenic short tandem repeats expansions

Shifts in ovine cardiopulmonary microRNA expression in late gestation and the perinatal period

scientific article published in PLoS ONE

Single cell analysis of the developing mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk

scientific article published on 12 June 2019

Splatter: simulation of single-cell RNA sequencing data

scientific article published on 12 September 2017

Targeting antigen to mouse dendritic cells via Clec9A induces potent CD4 T cell responses biased toward a follicular helper phenotype.

scientific article published on 15 June 2011

limma powers differential expression analyses for RNA-sequencing and microarray studies

scientific article (publication date: 20 April 2015)

missMethyl: an R package for analyzing data from Illumina's HumanMethylation450 platform

scientific article

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