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List of works by Ulrich Omasits

3-Layer-based analysis of peptide-MHC interaction: in silico prediction, peptide binding affinity and T cell activation in a relevant allergen-specific model.

scientific article

A comparative approach linking molecular dynamics of altered peptide ligands and MHC with in vivo immune responses

scientific article

A critical cross-validation of high throughput structural binding prediction methods for pMHC

scientific article published on 05 February 2009

A link between arabinose utilization and oxalotrophy in Bradyrhizobium japonicum.

scientific article published on 24 January 2014

A substrate-based ontology for human solute carriers

scientific article published on 01 July 2020

Cell-surface SLC nucleoside transporters and purine levels modulate BRD4-dependent chromatin states

scientific article published on 10 May 2021

Combine and conquer: surfactants, solvents, and chaotropes for robust mass spectrometry based analyses of membrane proteins.

scientific article published on 21 January 2014

Directed shotgun proteomics guided by saturated RNA-seq identifies a complete expressed prokaryotic proteome

scientific article published on 22 July 2013

Epistasis-driven identification of SLC25A51 as a regulator of human mitochondrial NAD import

scientific article published on 01 December 2020

Improved prediction of peptide detectability for targeted proteomics using a rank-based algorithm and organism-specific data

scientific article

Proteome-wide identification of predominant subcellular protein localizations in a bacterial model organism

scientific article published on 28 January 2014

Proteomics analysis of Psychotria leaf nodule symbiosis: improved genome annotation and metabolic predictions.

scientific article published in November 2013

Protter: interactive protein feature visualization and integration with experimental proteomic data

scientific article published on 24 October 2013

Side chain substitution benchmark for peptide/MHC interaction.

scientific article published on 23 April 2008

TASL is the SLC15A4-associated adaptor for IRF5 activation by TLR7-9

scientific article published on 13 May 2020

The AHL- and BDSF-dependent quorum sensing systems control specific and overlapping sets of genes in Burkholderia cenocepacia H111.

scientific article

The Bicarbonate Transporter SLC4A7 Plays a Key Role in Macrophage Phagosome Acidification.

scientific article published on 17 May 2018

The hemolymph proteome of fed and starved Drosophila larvae

scientific article (publication date: 2013)

The in silico human surfaceome

article published in the Proceedings of the National Academy of Sciences of the United States of America

jSimMacs for GROMACS: a Java application for advanced molecular dynamics simulations with remote access capability

scientific article

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