List of works - Valerie Reinke

A C. elegans LSD1 demethylase contributes to germline immortality by reprogramming epigenetic memory

scientific article published on April 2009

A C. elegans Piwi, PRG-1, regulates 21U-RNAs during spermatogenesis

scientific article

A Systematic RNAi Screen Reveals a Novel Role of a Spindle Assembly Checkpoint Protein BuGZ in Synaptic Transmission in C. elegans

scientific article

A comprehensive analysis of gene expression changes provoked by bacterial and fungal infection in C. elegans

scientific article

A genome-scale resource for in vivo tag-based protein function exploration in C. elegans

scientific article

A novel small molecule that disrupts a key event during the oocyte-to-embryo transition in C. elegans

scientific article

A spatial and temporal map of C. elegans gene expression

scientific article published on 22 December 2010

A widespread distribution of genomic CeMyoD binding sites revealed and cross validated by ChIP-Chip and ChIP-Seq techniques

scientific article (publication date: 2010)

C. elegans RNA-binding protein GLD-1 recognizes its multiple targets using sequence, context, and structural information to repress translation

scientific article published on October 2013

C. elegans meg‐1 and meg‐2 differentially interact with nanos family members to either promote or inhibit germ cell proliferation and survival ⬇️

scientific article published on May 1, 2011

C. elegans nucleostemin is required for larval growth and germline stem cell division

scientific article

C. elegans sym-1 is a downstream target of the hunchback-like-1 developmental timing transcription factor

scientific article published on 09 December 2009

Comparative analysis of regulatory information and circuits across distant species

scientific article

Comparative analysis of the transcriptome across distant species

scientific article

Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays

scientific article

Coordinate activation of maternal protein degradation during the egg-to-embryo transition in C. elegans

scientific article published in September 2003

Corrigendum: Regulatory analysis of the C. elegans genome with spatiotemporal resolution

scientific article published in Nature

DEPS-1 promotes P-granule assembly and RNA interference in C. elegans germ cells

scientific article published on 30 January 2008

DPL-1 (DP) acts in the germ line to coordinate ovulation and fertilization in C. elegans

scientific article

Developmental genomic approaches in model organisms

scientific article

Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans

scientific article

Expression profiling of MAP kinase-mediated meiotic progression in Caenorhabditis elegans

scientific article

Extrinsic and intrinsic control of germ cell proliferation in Caenorhabditis elegans ⬇️

scientific article published on February 17, 2011

Functional exploration of the C. elegans genome using DNA microarrays

scientific article

Gene clustering based on RNAi phenotypes of ovary-enriched genes in C. elegans

scientific article published in November 2002

Gene regulation: a tale of germline mRNA tails

scientific article published in October 2008

Genome-wide analysis of germ cell proliferation in C.elegans identifies VRK-1 as a key regulator of CEP-1/p53

scientific article published on 23 June 2010

Genome-wide analysis of sex-enriched gene expression during C. elegans larval development

scientific article

Genome-wide germline-enriched and sex-biased expression profiles in Caenorhabditis elegans

scientific article published on 10 December 2003

Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response

scientific article

Germline expression influences operon organization in the Caenorhabditis elegans genome

scientific article published on 09 February 2009

Germline genomics

scientific article published on 20 January 2006

Homeland security in the C. elegans germ line: insights into the biogenesis and function of piRNAs

scientific article published on 22 October 2013

Identification of an RNA Polymerase III Regulator Linked to Disease-Associated Protein Aggregation

scientific article published on March 2017

Insulin/IGF1 signaling inhibits age-dependent axon regeneration

scientific article published on 16 January 2014

Integrating interactome, phenome, and transcriptome mapping data for the C. elegans germline

scientific article

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project

scientific article

Isolated C. elegans germ nuclei exhibit distinct genomic profiles of histone modification and gene expression.

scientific article published on 17 June 2019

Learning "graph-mer" motifs that predict gene expression trajectories in development

scientific article

MEG-1 and MEG-2 are embryo-specific P-granule components required for germline development in Caenorhabditis elegans

scientific article

MES-4: an autosome-associated histone methyltransferase that participates in silencing the X chromosomes in the C. elegans germ line.

scientific article published on October 2006

Massively parallel sequencing of the polyadenylated transcriptome of C. elegans

scientific article published on 30 January 2009

New genes with roles in the C. elegans embryo revealed using RNAi of ovary-enriched ORFeome clones

scientific article

Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data

scientific article

Promotion of oogenesis and embryogenesis in the C. elegans gonad by EFL-1/DPL-1 (E2F) does not require LIN-35 (pRB).

scientific article published on 19 July 2006

Protection of specific maternal messenger RNAs by the P body protein CGH-1 (Dhh1/RCK) during Caenorhabditis elegans oogenesis

scientific article published on August 2008

Protein kinase VRK-1 regulates cell invasion and EGL-17/FGF signaling in Caenorhabditis elegans

scientific article

RSR-2, the Caenorhabditis elegans ortholog of human spliceosomal component SRm300/SRRM2, regulates development by influencing the transcriptional machinery

scientific article (publication date: June 2013)

Regulation of tissue-specific and extracellular matrix-related genes by a class I histone deacetylase

scientific article published on 01 May 2005

Regulatory analysis of the C. elegans genome with spatiotemporal resolution

scientific article published on August 2014

SPR-5 is a histone H3K4 demethylase with a role in meiotic double-strand break repair

scientific article

Sex and the genome

scientific article published in June 2004

Single cell analysis in C. elegans.

scientific article published in April 2016

The C. elegans SNAPc component SNPC-4 coats piRNA domains and is globally required for piRNA abundance

scientific article published on October 2014

The Germline-Specific Factor OEF-1 Facilitates Coordinated Progression Through Germ Cell Development in Caenorhabditis elegans

scientific article published on 22 November 2017

The candidate MAP kinase phosphorylation substrate DPL-1 (DP) promotes expression of the MAP kinase phosphatase LIP-1 in C. elegans germ cells

scientific article published on 8 January 2008

The kinase VRK1 is required for normal meiotic progression in mammalian oogenesis ⬇️

scientific article published on January 26, 2011

The modERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors

scientific article published on 28 December 2017

The time-resolved transcriptome of C. elegans

scientific article published on 16 August 2016

Think globally, act locally

scientific article published on 01 March 2007

Tissue-specific direct targets of Caenorhabditis elegans Rb/E2F dictate distinct somatic and germline programs

scientific article published on 23 January 2013

Transcriptional regulation of gene expression in C. elegans

scientific article published on 04 June 2013

X-chromosome silencing in the germline of C. elegans

scientific article

YMD: a microarray database for large-scale gene expression analysis.

scientific article

p38 MAPK regulates expression of immune response genes and contributes to longevity in C. elegans

scientific article

synMuv B proteins antagonize germline fate in the intestine and ensure C. elegans survival

scientific article

List of works by Valerie Reinke

A C. elegans LSD1 demethylase contributes to germline immortality by reprogramming epigenetic memory

A C. elegans Piwi, PRG-1, regulates 21U-RNAs during spermatogenesis

A Systematic RNAi Screen Reveals a Novel Role of a Spindle Assembly Checkpoint Protein BuGZ in Synaptic Transmission in C. elegans

A comprehensive analysis of gene expression changes provoked by bacterial and fungal infection in C. elegans

A genome-scale resource for in vivo tag-based protein function exploration in C. elegans

A novel small molecule that disrupts a key event during the oocyte-to-embryo transition in C. elegans

A spatial and temporal map of C. elegans gene expression

A widespread distribution of genomic CeMyoD binding sites revealed and cross validated by ChIP-Chip and ChIP-Seq techniques

C. elegans RNA-binding protein GLD-1 recognizes its multiple targets using sequence, context, and structural information to repress translation

C. elegans meg‐1 and meg‐2 differentially interact with nanos family members to either promote or inhibit germ cell proliferation and survival ⬇️

C. elegans nucleostemin is required for larval growth and germline stem cell division

C. elegans sym-1 is a downstream target of the hunchback-like-1 developmental timing transcription factor

Comparative analysis of regulatory information and circuits across distant species

Comparative analysis of the transcriptome across distant species

Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays

Coordinate activation of maternal protein degradation during the egg-to-embryo transition in C. elegans

Corrigendum: Regulatory analysis of the C. elegans genome with spatiotemporal resolution

DEPS-1 promotes P-granule assembly and RNA interference in C. elegans germ cells

DPL-1 (DP) acts in the germ line to coordinate ovulation and fertilization in C. elegans

Developmental genomic approaches in model organisms

Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans

Expression profiling of MAP kinase-mediated meiotic progression in Caenorhabditis elegans

Extrinsic and intrinsic control of germ cell proliferation in Caenorhabditis elegans ⬇️

Functional exploration of the C. elegans genome using DNA microarrays

Gene clustering based on RNAi phenotypes of ovary-enriched genes in C. elegans

Gene regulation: a tale of germline mRNA tails

Genome-wide analysis of germ cell proliferation in C.elegans identifies VRK-1 as a key regulator of CEP-1/p53

Genome-wide analysis of sex-enriched gene expression during C. elegans larval development

Genome-wide germline-enriched and sex-biased expression profiles in Caenorhabditis elegans

Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response

Germline expression influences operon organization in the Caenorhabditis elegans genome

Germline genomics

Homeland security in the C. elegans germ line: insights into the biogenesis and function of piRNAs

Identification of an RNA Polymerase III Regulator Linked to Disease-Associated Protein Aggregation

Insulin/IGF1 signaling inhibits age-dependent axon regeneration

Integrating interactome, phenome, and transcriptome mapping data for the C. elegans germline

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project

Isolated C. elegans germ nuclei exhibit distinct genomic profiles of histone modification and gene expression.

Learning "graph-mer" motifs that predict gene expression trajectories in development

MEG-1 and MEG-2 are embryo-specific P-granule components required for germline development in Caenorhabditis elegans

MES-4: an autosome-associated histone methyltransferase that participates in silencing the X chromosomes in the C. elegans germ line.

Massively parallel sequencing of the polyadenylated transcriptome of C. elegans

New genes with roles in the C. elegans embryo revealed using RNAi of ovary-enriched ORFeome clones

Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data

Promotion of oogenesis and embryogenesis in the C. elegans gonad by EFL-1/DPL-1 (E2F) does not require LIN-35 (pRB).

Protection of specific maternal messenger RNAs by the P body protein CGH-1 (Dhh1/RCK) during Caenorhabditis elegans oogenesis

Protein kinase VRK-1 regulates cell invasion and EGL-17/FGF signaling in Caenorhabditis elegans

RSR-2, the Caenorhabditis elegans ortholog of human spliceosomal component SRm300/SRRM2, regulates development by influencing the transcriptional machinery

Regulation of tissue-specific and extracellular matrix-related genes by a class I histone deacetylase

Regulatory analysis of the C. elegans genome with spatiotemporal resolution

SPR-5 is a histone H3K4 demethylase with a role in meiotic double-strand break repair

Sex and the genome

Single cell analysis in C. elegans.

The C. elegans SNAPc component SNPC-4 coats piRNA domains and is globally required for piRNA abundance

The Germline-Specific Factor OEF-1 Facilitates Coordinated Progression Through Germ Cell Development in Caenorhabditis elegans

The candidate MAP kinase phosphorylation substrate DPL-1 (DP) promotes expression of the MAP kinase phosphatase LIP-1 in C. elegans germ cells

The kinase VRK1 is required for normal meiotic progression in mammalian oogenesis ⬇️

The modERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors

The time-resolved transcriptome of C. elegans

Think globally, act locally

Tissue-specific direct targets of Caenorhabditis elegans Rb/E2F dictate distinct somatic and germline programs

Transcriptional regulation of gene expression in C. elegans

X-chromosome silencing in the germline of C. elegans

YMD: a microarray database for large-scale gene expression analysis.

p38 MAPK regulates expression of immune response genes and contributes to longevity in C. elegans

synMuv B proteins antagonize germline fate in the intestine and ensure C. elegans survival