List of works by Kevin Bretonnel Cohen

A Controlled Trial Using Natural Language Processing to Examine the Language of Suicidal Adolescents in the Emergency Department.

scientific article published on 7 August 2015

A Machine Learning Approach to Identifying Changes in Suicidal Language

scientific article published on 02 June 2020

A Machine Learning Approach to Identifying the Thought Markers of Suicidal Subjects: A Prospective Multicenter Trial

scientific article published on 3 November 2016

A Modular Ontology for Modeling Service Provision in a Communication Network for Coordination of Care

A Primer to the Structure, Content and Linkage of the FDA's Manufacturer and User Facility Device Experience (MAUDE) Files.

scientific article

A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools

scientific article

A critical review of PASBio's argument structures for biomedical verbs

scientific article published on 24 November 2006

A fault model for ontology mapping, alignment, and linking systems.

scientific article published on January 2007

A nonparametric Bayesian method of translating machine learning scores to probabilities in clinical decision support

scientific article published on 07 August 2017

An open-source framework for large-scale, flexible evaluation of biomedical text mining systems

scientific article

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

scientific article published on 17 January 2013

Applied Text Mining

Assessing the similarity of surface linguistic features related to epilepsy across pediatric hospitals

scientific article

BioC: a minimalist approach to interoperability for biomedical text processing

scientific article

BioCreAtIvE task1A: entity identification with a stochastic tagger

scientific article

BioCreative-2012 virtual issue

scientific article published on 5 December 2012

BioCreative-IV virtual issue

scientific article published on 22 May 2014

BioHackathon 2015: Semantics of data for life sciences and reproducible research

scientific article published on 24 February 2020

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

scientific article (publication date: 5 February 2014)

Biomedical language processing: what's beyond PubMed?

scientific article

Chapter 16: text mining for translational bioinformatics

scientific article

Clinical Information Extraction at the CLEF eHealth Evaluation lab 2016.

scientific article published in September 2016

Combining heterogenous data for prediction of disease related and pharmacogenes

scientific article (publication date: 2014)

Concept annotation in the CRAFT corpus

scientific article

Concept recognition for extracting protein interaction relations from biomedical text

scientific article published on September 2008

Contrast and variability in gene names

article

Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles

scientific article

Corpus design for biomedical natural language processing

scholarly article published 2005

Corpus refactoring: a feasibility study

scientific article

Crowdsourcing and curation: perspectives from biology and natural language processing

scientific article

Current issues in biomedical text mining and natural language processing.

scientific article published on 6 September 2009

Editor's introduction to the special issue of the 6th Biomedical Linked Annotation Hackathon (BLAH6)

scientific article published on 24 June 2020

Empirical data on corpus design and usage in biomedical natural language processing.

scientific article

Erratum to: Replicability and reproducibility of research results for human language technology: introducing an LRE special section

scholarly article published in Language Resources and Evaluation

Evaluation of lexical methods for detecting relationships between concepts from multiple ontologies.

scientific article

Exploring species-based strategies for gene normalization.

scientific article

Finding GeneRIFs via gene ontology annotations.

scientific article

Frontiers of biomedical text mining: current progress

scientific article published on September 2007

GOF/LOF knowledge inference with tensor decomposition in support of high order link discovery for gene, mutation and disease

scientific article published on 01 February 2019

Gene Ontology synonym generation rules lead to increased performance in biomedical concept recognition

scientific article

GeneRIF quality assurance as summary revision

scientific article

Getting started in text mining

scientific article

HIGH-PRECISION BIOLOGICAL EVENT EXTRACTION: EFFECTS OF SYSTEM AND OF DATA.

scientific article

Habitat-Lite: a GSC case study based on free text terms for environmental metadata

scientific article published on June 2008

High-precision biological event extraction with a concept recognizer

scientific article published in 2009

Implications of compositionality in the gene ontology for its curation and usage

scientific article published on January 2005

Improving precision in concept normalization

scientific article published in January 2018

Integrating text mining into high-throughput assay analysis.

scientific article published on 6 October 2010

Inter-Annotator Agreement and the Upper Limit on Machine Performance: Evidence from Biomedical Natural Language Processing

scientific article published in January 2017

Interpersonal prosodic correlation in frontotemporal dementia

scientific article published on 17 June 2019

Intrinsic evaluation of text mining tools may not predict performance on realistic tasks.

scientific article published on January 2008

Introduction to BLAH5 special issue: recent progress on interoperability of biomedical text mining

scientific article published on 27 June 2019

Introduction to the Biomedical Linked Annotation Hackathon (BLAH) 2015 Symposium

scientific article

Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters

scientific article (publication date: 26 February 2014)

Manual curation is not sufficient for annotation of genomic databases

scientific article

MetaMap is a superior baseline to a standard document retrieval engine for the task of finding patient cohorts in clinical free text

scientific article published on 01 January 2011

Methodological Issues in Predicting Pediatric Epilepsy Surgery Candidates Through Natural Language Processing and Machine Learning

scientific article published on 22 May 2016

Mining FDA drug labels for medical conditions

scientific article

Mining the pharmacogenomics literature--a survey of the state of the art

scientific article (publication date: July 2012)

MutationFinder: a high-performance system for extracting point mutation mentions from text

scientific article

Natural Language Processing and Systems Biology

Natural Language Processing and Systems Biology

Natural language processing for rapid response to emergent diseases: Application to calcium channel blockers therapy in hypertensive patients with COVID-19 infection

scientific article published on 26 July 2020

Nominalization and alternations in biomedical language

scientific article

Ontology quality assurance through analysis of term transformations

scientific article published on June 2009

Ontology translation: A case study on translating the Gene Ontology from English to German

article

Open Agile text mining for bioinformatics: the PubAnnotation ecosystem

scientific article published on 01 November 2019

OpenDMAP: an open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression

scientific article

Overview of BioCreative II gene normalization

scientific article published on September 2008

Overview of the BioCreative III Workshop

scientific article

P-Hacking Lexical Richness Through Definitions of "Type" and "Token"

scientific article published on 01 August 2019

Parenthetically speaking: classifying the contents of parentheses for text mining.

scientific article

Plasma carotenoids and the risk of premalignant breast disease in women aged 50 and younger: a nested case-control study.

scientific article published on 11 February 2017

PubAnnotation-query: a search tool for corpora with multi-layers of annotation.

scientific article published on 6 August 2015

Rapid pattern development for concept recognition systems: application to point mutations.

scientific article published in December 2007

Refactoring corpora

Refactoring corpora

Replicability and reproducibility of research results for human language technology: introducing an LRE special section

Reproducibility in Natural Language Processing: A Case Study of Two R Libraries for Mining PubMed/MEDLINE

article published in 2016

Semantic Relations in Compound Nouns: Perspectives from Inter-Annotator Agreement

scientific article published in January 2017

Sentiment Analysis of Suicide Notes: A Shared Task

scientific article published in January 2012

Software testing and the naturally occurring data assumption in natural language processing

article

Sublanguage Corpus Analysis Toolkit: A tool for assessing the representativeness and sublanguage characteristics of corpora

SuperCAT: The (New and Improved) Corpus Analysis Toolkit

article published in 2016

TRANSLATING BIOLOGY: TEXT MINING TOOLS THAT WORK ⬇️

scientific article published on January 1, 2008

Text and data mining for biomedical discovery

scientific article published on 01 January 2013

Text mining and manual curation of chemical-gene-disease networks for the comparative toxicogenomics database (CTD)

scientific article (publication date: 8 October 2009)

Text mining for the biocuration workflow

scientific article

The compositional structure of Gene Ontology terms.

scientific article published on January 2004

The structural and content aspects of abstracts versus bodies of full text journal articles are different

scientific article

The textual characteristics of traditional and Open Access scientific journals are similar

scientific article

Themes in biomedical natural language processing: BioNLP08.

scientific article

Three Dimensions of Reproducibility in Natural Language Processing

Training the next generation of quantitative biologists in the era of big data

Translational Morphosyntax: Distribution of Negation in Clinical Records and Biomedical Journal Articles

scientific article published in January 2017

U-Compare bio-event meta-service: compatible BioNLP event extraction services

scientific article (publication date: 18 December 2011)

U-Compare: A modular NLP workflow construction and evaluation system

U-Compare: share and compare text mining tools with UIMA

scientific article

Visualization and Language Processing for Supporting Analysis across the Biomedical Literature

scholarly article by Carsten Görg et al published 2010 in Lecture Notes in Computer Science

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