List of works - Duygu Ucar

A CD4+ T cell population expanded in lupus blood provides B cell help through interleukin-10 and succinate

scientific article published on 26 November 2018

A neural network based model effectively predicts enhancers from clinical ATAC-seq samples

scientific article published in Scientific Reports

A spatio-temporal mining approach towards summarizing and analyzing protein folding trajectories

scientific article published on 4 April 2007

An ensemble framework for clustering protein-protein interaction networks.

scientific article published in July 2007

Cell Specificity of Human Regulatory Annotations and Their Genetic Effects on Gene Expression

scientific article published on 28 December 2018

CoRE-ATAC: A deep learning model for the functional classification of regulatory elements from single cell and bulk ATAC-seq data

scientific article published on 13 December 2021

Detection of correlated hidden factors from single cell transcriptomes using Iteratively Adjusted-SVA (IA-SVA)

scientific article published in Scientific Reports

Epigenetic memory of coronavirus infection in innate immune cells and their progenitors

scientific article published in 2023

Expansion of oligodendrocyte progenitor cells following SIRT1 inactivation in the adult brain.

scientific article

FOXO3 shares common targets with ASCL1 genome-wide and inhibits ASCL1-dependent neurogenesis.

scientific article published on 25 July 2013

Functional characterization of T2D-associated SNP effects on baseline and ER stress-responsive β cell transcriptional activation

scientific article published on 02 September 2021

Leukaemia cell of origin identified by chromatin landscape of bulk tumour cells.

scientific article published on 11 July 2016

Sestrins induce natural killer function in senescent-like CD8+ T cells

scientific article published on 30 March 2020

Sexual-dimorphism in human immune system aging

scientific article published on 06 February 2020

The chromatin accessibility signature of human immune aging stems from CD8+ T cells.

scientific article

Transgenerational epigenetic inheritance of longevity in Caenorhabditis elegans

scientific article

List of works by Duygu Ucar

A CD4+ T cell population expanded in lupus blood provides B cell help through interleukin-10 and succinate

A neural network based model effectively predicts enhancers from clinical ATAC-seq samples

A spatio-temporal mining approach towards summarizing and analyzing protein folding trajectories

An ensemble framework for clustering protein-protein interaction networks.

Cell Specificity of Human Regulatory Annotations and Their Genetic Effects on Gene Expression

CoRE-ATAC: A deep learning model for the functional classification of regulatory elements from single cell and bulk ATAC-seq data

Detection of correlated hidden factors from single cell transcriptomes using Iteratively Adjusted-SVA (IA-SVA)

Epigenetic memory of coronavirus infection in innate immune cells and their progenitors

Expansion of oligodendrocyte progenitor cells following SIRT1 inactivation in the adult brain.

FOXO3 shares common targets with ASCL1 genome-wide and inhibits ASCL1-dependent neurogenesis.

Functional characterization of T2D-associated SNP effects on baseline and ER stress-responsive β cell transcriptional activation

Leukaemia cell of origin identified by chromatin landscape of bulk tumour cells.

Sestrins induce natural killer function in senescent-like CD8+ T cells

Sexual-dimorphism in human immune system aging

The chromatin accessibility signature of human immune aging stems from CD8+ T cells.

Transgenerational epigenetic inheritance of longevity in Caenorhabditis elegans