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List of works by Yan Cui

A GPU-accelerated algorithm for biclustering analysis and detection of condition-dependent coexpression network modules

scientific article

An integrative genomics strategy for systematic characterization of genetic loci modulating phenotypes

scientific article published on 11 April 2007

Author Correction: Deep transfer learning for reducing health care disparities arising from biomedical data inequality

scientific article published on 18 December 2020

Autosomal similarity revealed by eukaryotic genomic comparison.

scientific article

Bayesian Network Webserver: a comprehensive tool for biological network modeling.

scientific article published on 21 August 2013

CTCFBSDB 2.0: a database for CTCF-binding sites and genome organization.

scientific article

CbGRiTS: cerebellar gene regulation in time and space.

scientific article published on 23 October 2014

Combining gene expression QTL mapping and phenotypic spectrum analysis to uncover gene regulatory relationships.

scientific article published on 12 June 2006

Deep transfer learning for reducing health care disparities arising from biomedical data inequality

scientific article published on 12 October 2020

Deletion of DGCR8 in VSMCs of adult mice results in loss of vascular reactivity, reduced blood pressure and neointima formation

scientific article published on 23 January 2018

Expression QTL modules as functional components underlying higher-order phenotypes

scientific article

Functional Analysis of Genetic Variants and Somatic Mutations Impacting MicroRNA-Target Recognition: Bioinformatics Resources

scientific article published on 01 January 2019

Functional impacts of non-synonymous single nucleotide polymorphisms: selective constraint and structural environments.

scientific article

Gene-by-environment modulation of lifespan and weight gain in the murine BXD family

scientific article published on 22 September 2021

Genetic control of weight loss during pneumonic Burkholderia pseudomallei infection

scientific article

Host genetics and Chlamydia disease: prediction and validation of disease severity mechanisms

scientific article

In silico mapping of polymorphic miRNA-mRNA interactions in autoimmune thyroid diseases

scientific article published on 10 March 2014

Inferring gene transcriptional modulatory relations: a genetical genomics approach

article

Integrative analysis of somatic mutations altering microRNA targeting in cancer genomes

scientific article

Integrative genetic analysis of transcription modules: towards filling the gap between genetic loci and inherited traits

article

Knowledge-based analysis of functional impacts of mutations in microRNA seed regions.

scientific article published on October 2015

Molecular dynamic simulation of chaperonin-mediated protein folding.

scientific article published in May 1998

Molecular dynamics simulation of protein folding with supersecondary structure constraints.

scientific article published in November 1998

Multiple-sequence information provides protection against mis-specified potential energy functions in the lattice model of proteins

scientific article published on 01 December 2000

Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression

scientific article

PolymiRTS Database 2.0: linking polymorphisms in microRNA target sites with human diseases and complex traits ⬇️

scientific article published on November 10, 2011

PolymiRTS Database 3.0: linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways

scientific article published on 24 October 2013

PolymiRTS Database: linking polymorphisms in microRNA target sites with complex traits

scientific article

Pre-transplant predictors of one yr weight gain after kidney transplantation.

scientific article

Precise Network Modeling of Systems Genetics Data Using the Bayesian Network Webserver

scientific article

Prediction of the phenotypic effects of non-synonymous single nucleotide polymorphisms using structural and evolutionary information.

scientific article

Profiling Caenorhabditis elegans non-coding RNA expression with a combined microarray

scientific article

Recombinatoric exploration of novel folded structures: a heteropolymer-based model of protein evolutionary landscapes

scientific article

SomamiR 2.0: a database of cancer somatic mutations altering microRNA-ceRNA interactions.

scientific article published on 17 November 2015

SomamiR: a database for somatic mutations impacting microRNA function in cancer.

scientific article

Systematic analysis of microRNA targeting impacted by small insertions and deletions in human genome

scientific article

Systems genetics analysis of molecular pathways underlying ethanol-induced behavioral phenotypes

article

The coevolution of cell senescence and diploid sexual reproduction in unicellular organisms.

scientific article

Transfer Learning for Molecular Cancer Classification Using Deep Neural Networks

scientific article published on 04 April 2018

Treatment- and population-dependent activity patterns of behavioral and expression QTLs

scientific article

Type-2 Fuzzy PCA Approach in Extracting Salient Features for Molecular Cancer Diagnostics and Prognostics

scientific article published on 20 May 2019

miR2GO: comparative functional analysis for microRNAs

scientific article published on 10 March 2015

miRNA biogenesis enzyme Drosha is required for vascular smooth muscle cell survival

scientific article

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