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List of works by Debnath Pal

A proline insertion-deletion in the spike glycoprotein fusion peptide of mouse hepatitis virus strongly alters neuropathology

scientific article published on 01 March 2019

Aggregation of M3 (E376D) variant of alpha1- antitrypsin

scientific article published on 19 May 2020

Assessing the performance of in silico methods for predicting the pathogenicity of variants in the gene CHEK2, among Hispanic females with breast cancer

scientific article published on 17 August 2019

Assessment of Adaptive Breast Cancer Screening Policies for Improved Mortality Reduction in Low to Middle Income Countries

scientific article published on 27 September 2017

Avoiding acidic region streaking in two-dimensional gel electrophoresis: case study with two bacterial whole cell protein extracts

scientific article published on 01 September 2014

Chemical Shifts to Metabolic Pathways: Identifying Metabolic Pathways Directly from a Single 2D NMR Spectrum.

scientific article published on 10 November 2015

Cis peptide bonds in proteins: residues involved, their conformations, interactions and locations

scientific article published on 01 November 1999

Combinatorial Design of Molecule using Activity-Linked Substructural Topological Information as Applied to Antitubercular Compounds

scientific article published on 01 January 2019

Combining Bayes classification and point group symmetry under Boolean framework for enhanced protein quaternary structure inference.

scientific article published in March 2011

Computational design of model scaffold for anion recognition based on the 'Cα NN' motif

scientific article published on 18 July 2016

Conformational properties of alpha-tubulin tail peptide: implications for tail-body interaction

scientific article published on 01 December 2001

Conformational similarity indices between different residues in proteins and alpha-helix propensities

scientific article published on 01 October 2000

DJ-1-Nrf2 axis is activated upon murine β-coronavirus infection in the CNS

scientific article published on 05 September 2021

De novo inference of protein function from coarse-grained dynamics.

scientific article published on 9 June 2014

Different types of interactions involving cysteine sulfhydryl group in proteins.

scientific article published in June 1998

Estimates of the loss of main-chain conformational entropy of different residues on protein folding

scientific article published on 01 August 1999

Exploring the use of molecular dynamics in assessing protein variants for phenotypic alterations

article

Functional linkages can reveal protein complexes for structure determination

scientific article published on September 2007

Functionally important segments in proteins dissected using Gene Ontology and geometric clustering of peptide fragments.

scientific article published on 10 March 2008

Graphical representation of the salient conformational features of protein residues

scientific article published on 01 July 1999

Identifying functionally important cis-peptide containing segments in proteins and their utility in molecular function annotation.

scientific article

Inference of protein function from protein structure.

scientific article

Inferring molecular function: contributions from functional linkages

scientific article published on 24 October 2008

Interaction of arsenic with gap junction protein connexin 43 alters gap junctional intercellular communication

scientific article published on 19 July 2018

Interface of Apoptotic Protein Complexes Has Distinct Properties ⬇️

scientific article published on January 1, 2009

Main-chain conformational features at different conformations of the side-chains in proteins ⬇️

scientific article published on August 1, 1998

Mass Spectrometry-Based Diagnosis of Hemoglobinopathies: A Potential Tool for the Screening of Genetic Disorder.

scientific article published in July 2016

Mass spectrometry based characterization of Hb Beckman variant in a falsely elevated HbA(1c) sample

scientific article published on 23 July 2015

Molecular Dynamics Information Improves cis-Peptide-Based Function Annotation of Proteins.

scientific article published on 21 June 2017

Molecular insights of inhibition in sickle hemoglobin polymerization upon glutathionylation: hydrogen/deuterium exchange mass spectrometry and molecular dynamics simulation-based approach

scientific article published on 05 July 2018

More hydrogen bonds for the (structural) biologist.

scientific article

Network-based identification of miRNAs and transcription factors and <i>in silico</i> drug screening targeting δ-secretase involved in Alzheimer's disease

scientific article published on 29 November 2021

New Facets of Larger Nest Motifs in Proteins

scientific article published on 09 June 2020

New measures for estimating surface complementarity and packing at protein-protein interfaces.

scientific article published on 12 February 2010

New principles of protein structure: nests, eggs--and what next?

scientific article

Non-hydrogen bond interactions involving the methionine sulfur atom.

scientific article published in August 2001

Numerical simulation of a glucose sensitive composite membrane closed-loop insulin delivery system

scientific article published on 24 June 2017

On residues in the disallowed region of the Ramachandran map ⬇️

scientific article published on March 1, 2002

PRUNE and PROBE--two modular web services for protein-protein docking.

scientific article

Packing of aromatic rings against tryptophan residues in proteins

scientific article published on 01 August 1999

Pattern Recognition-Based Approach for Identifying Metabolites in Nuclear Magnetic Resonance-Based Metabolomics.

scientific article published on 10 July 2015

Pipeline for inferring protein function from dynamics using coarse-grained molecular mechanics forcefield.

scientific article

Predicting gas phase entropy of select hydrocarbon classes through specific information-theoretical molecular descriptors

scientific article published on 20 June 2019

Saccharomyces cerevisiae Hop1 protein zinc finger motif binds to the Holliday junction and distorts the DNA structure: implications for holliday junction migration.

scientific article published on 13 October 2007

Serum biomarkers identification by iTRAQ and verification by MRM: S100A8/S100A9 levels predict tumor-stroma involvement and prognosis in Glioblastoma

scientific article published on 26 February 2019

Terminal residues in protein chains: residue preference, conformation, and interaction

scientific article published on 01 May 2000

The interrelationships of side-chain and main-chain conformations in proteins.

scientific article published in January 2001

The unique functional role of the C-HS hydrogen bond in the substrate specificity and enzyme catalysis of type 1 methionine aminopeptidase

scientific article

Two new atom centered fragment descriptors and scoring function enhance classification of antibacterial activity

scientific article published on 25 March 2014

Use of Vertex Index in Structure-Activity Analysis and Design of Molecules ⬇️

scientific article published on June 1, 2012

Using correlated parameters for improved ranking of protein-protein docking decoys.

scientific article

WebGeSTer DB—a transcription terminator database ⬇️

scientific article published on October 23, 2010

beta-sheet propensity and its correlation with parameters based on conformation

scientific article published on 01 May 2000

dockYard--a repository to assist modeling of protein-protein docking

scientific article published on 04 June 2010

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