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List of works by Jacob Beal

Accurate predictions of genetic circuit behavior from part characterization and modular composition.

scientific article

Author Correction: Robust estimation of bacterial cell count from optical density

scientific article published on 27 October 2020

Automated selection of synthetic biology parts for genetic regulatory networks.

scientific article published on 25 July 2012

Automatic compilation from high-level biologically-oriented programming language to genetic regulatory networks

scientific article (publication date: 2011)

CRISPR transcriptional repression devices and layered circuits in mammalian cells

scientific article

Cas9 gRNA engineering for genome editing, activation and repression.

scientific article

Communicating Structure and Function in Synthetic Biology Diagrams

scientific article published on 05 August 2019

Core operational semantics of Proto

Highly Distinguished Amino Acid Sequences of 2019-nCoV (Wuhan Coronavirus)

scientific article

Highly-automated, high-throughput replication of yeast-based logic circuit design assessments

scientific article published in 2022

Levels of autonomy in synthetic biology engineering

scientific article published on 01 December 2020

Linda in Space-Time: An Adaptive Coordination Model for Mobile Ad-Hoc Environments

Managing bioengineering complexity with AI techniques.

scientific article published on 3 September 2015

Model-driven engineering of gene expression from RNA replicons.

scientific article

Organizing genome engineering for the gigabase scale

scientific article published on 04 February 2020

Proposed data model for the next version of the synthetic biology open language

scientific article

QuaFL

Quantification of bacterial fluorescence using independent calibrants.

scientific article published on 21 June 2018

Reaction factoring and bipartite update graphs accelerate the Gillespie Algorithm for large-scale biochemical systems

scientific article

Reducing DNA context dependence in bacterial promoters

scientific article

Robust estimation of bacterial cell count from optical density

scientific article published on 17 September 2020

SBOL Visual 2 Ontology

scientific article published on 08 April 2020

Space-time programming

scientific article published in July 2015

Synthetic Biology Open Language (SBOL) Version 2.3.

scientific article published on 13 June 2019

Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0.

scientific article published on 17 March 2018

Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1.

scientific article published on 13 June 2019

Synthetic biology open language (SBOL) version 3.0.0.

scientific article published on 25 June 2020

Synthetic biology open language visual (SBOL visual) version 2.2.

scientific article published on 10 June 2020

TASBE Flow Analytics: A Package for Calibrated Flow Cytometry Analysis

scientific article published on 09 May 2019

The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology.

scientific article

Time to Get Serious about Measurement in Synthetic Biology

scientific article published on 04 June 2018

pySBOL3: SBOL3 for Python Programmers

scientific article published on 29 June 2022

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