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List of works by Alex Gavryushkin

A Fast Lasso-Based Method for Inferring Higher-Order Interactions

A Fast Lasso-Based Method for Inferring Pairwise Interactions

A fast lasso-based method for inferring higher-order interactions

scientific article published on 29 December 2022

Accounting for Errors in Data Improves Divergence Time Estimates in Single-cell Cancer Evolution

scientific article published on 23 June 2022

Accounting for errors in data improves timing in single-cell cancer evolution

Accurate Bayesian phylogenetic point estimation using a tree distribution parameterized by clade probabilities

Automated convergence diagnostic for phylogenetic MCMC analyses

Computing nearest neighbour interchange distances between ranked phylogenetic trees

scientific article published in 2021

Discrete coalescent trees

scientific article published in 2021

Estimating the mean in the space of ranked phylogenetic trees

Geometry of Ranked Nearest Neighbour Interchange Space of Phylogenetic Trees

High-dimensional microbiome interactions shape host fitness

How well can the exponential-growth coalescent approximate constant-rate birth-death population dynamics?

scientific article

Inferring Genetic Interactions From Comparative Fitness Data

Inferring genetic interactions from comparative fitness data.

scientific article published on 20 December 2017

Learning epistatic gene interactions from perturbation screens

scientific article published on 13 July 2021

Learning epistatic gene interactions from perturbation screens

Microbiome interactions shape host fitness

article published in the Proceedings of the National Academy of Sciences of the United States of America

Microbiome interactions shape host fitness

scientific article published on 11 December 2018

Online Bayesian Analysis with BEAST 2

Ranked Subtree Prune and Regraft

scholarly article

Ranked Subtree Prune and Regraft

Reducibilities among equivalence relations induced by recursively enumerable structures

SNVformer: An Attention-based Deep Neural Network for GWAS Data

Sustained software development, not number of citations or journal choice, is indicative of accurate bioinformatic software

scientific article published on 16 February 2022

Testing for Phylogenetic Signal in Single-Cell RNA-Seq Data

scientific article published in April 2023

Testing for phylogenetic signal in single-cell RNA-seq data

The Fossilised Birth-Death Model is Identifiable

The combinatorics of discrete time-trees: theory and open problems.

scientific article

The geometry of partial fitness orders and an efficient method for detecting genetic interactions

The geometry of partial fitness orders and an efficient method for detecting genetic interactions

scientific article published on 07 May 2018

The space of ultrametric phylogenetic trees ⬇️

scientific article

Tiling algebra for constraint-based layout editing

scientific article published in 2017

Tuberous sclerosis complex: a complex case

scientific article published on 28 April 2022

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