List of works - Bernd Wemheuer

A comparative metagenome survey of the fecal microbiota of a breast- and a plant-fed Asian elephant reveals an unexpectedly high diversity of glycoside hydrolase family enzymes

scientific article

Adaptation of an abundant Roseobacter RCA organism to pelagic systems revealed by genomic and transcriptomic analyses

scientific article

Agroforestry Management Systems Drive the Composition, Diversity, and Function of Fungal and Bacterial Endophyte Communities in Theobroma Cacao Leaves

scientific article published on 13 March 2020

Assembly processes of trophic guilds in the root mycobiome of temperate forests

scientific article published on 28 October 2018

Assessing Bacterial and Fungal Diversity in the Plant Endosphere.

scientific article

Bacterial community dynamics during polysaccharide degradation at contrasting sites in the Southern and Atlantic Oceans

scientific article published on 10 March 2015

Bacterial endophyte communities of three agricultural important grass species differ in their response towards management regimes

scientific article

Biogeography and environmental genomics of the Roseobacter-affiliated pelagic CHAB-I-5 lineage

scientific article

Biogeography of the human ocular microbiota

scientific article published on 13 November 2018

Comparative Genomics Reveals Ecological and Evolutionary Insights into Sponge-Associated Thaumarchaeota

scientific article published on 13 August 2019

Complementary Metaproteomic Approaches to Assess the Bacterioplankton Response toward a Phytoplankton Spring Bloom in the Southern North Sea.

scientific article

Deciphering associations between dissolved organic molecules and bacterial communities in a pelagic marine system

scientific article published on 22 January 2016

Deciphering bacterial and fungal endophyte communities in leaves of two maple trees with green islands

scientific article published on 02 October 2019

Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies

scientific article

Diet and diet-associated bacteria shape early microbiome development in Yellowtail Kingfish (Seriola lalandi)

scientific article published on 01 December 2018

Different response of bacteria, archaea and fungi to process parameters in nine full-scale anaerobic digesters

scientific article published on 17 April 2019

Distinct compositions of free-living, particle-associated and benthic communities of the Roseobacter group in the North Sea.

scientific article published on 24 November 2015

Distinct relationships between fluorescence in situ hybridization and 16S rRNA gene- and amplicon-based sequencing data of bacterioplankton lineages

scientific article published on 04 July 2019

Draft Genome Sequence of Pseudomonas putida Strain GM4FR, an Endophytic Bacterium Isolated from Festuca rubra L

scientific article

Draft Genome Sequence of the Endophyte Bacillus mycoides Strain GM6LP Isolated from Lolium perenne

scientific article published in February 2018

Draft Genome Sequence of the Endophyte Paenibacillus sp. Strain GM2FR Isolated from Festuca rubra

scientific article published on 8 February 2018

Driving forces of soil bacterial community structure, diversity, and function in temperate grasslands and forests

scientific article

Editorial: Molecular Ecology and Genetic Diversity of the Roseobacter Clade.

scientific article published in June 2018

Effects of Fertilization and Sampling Time on Composition and Diversity of Entire and Active Bacterial Communities in German Grassland Soils

scientific article published on 22 December 2015

Extraction of Total DNA and RNA from Marine Filter Samples and Generation of a cDNA as Universal Template for Marker Gene Studies.

scientific article published in January 2017

First Insights into the Draft Genome Sequence of the Endophyte Paenibacillus amylolyticus Strain GM1FR, Isolated from Festuca rubra L.

scientific article

Fungal Endophyte Communities of Three Agricultural Important Grass Species Differ in Their Response Towards Management Regimes

Gut Microbiota in Children With Cystic Fibrosis: A Taxonomic and Functional Dysbiosis

scientific article published on 09 December 2019

Gut microbiota in neonates with congenital gastrointestinal surgical conditions: a prospective study

scientific article published on 16 March 2020

High abundance of heterotrophic prokaryotes in hydrothermal springs of the Azores as revealed by a network of 16S rRNA gene-based methods

scientific article

Identification and Visualization of a Distinct Microbiome in Ocular Surface Conjunctival Tissue

scientific article published on 01 August 2018

Impact of Viral Lysis on the Composition of Bacterial Communities and Dissolved Organic Matter in Deep-Sea Sediments

scientific article published on 22 August 2020

Impact of a phytoplankton bloom on the diversity of the active bacterial community in the southern North Sea as revealed by metatranscriptomic approaches

scientific article

Linking Compositional and Functional Predictions to Decipher the Biogeochemical Significance in DFAA Turnover of Abundant Bacterioplankton Lineages in the North Sea.

scientific article

MetaCHIP: community-level horizontal gene transfer identification through the combination of best-match and phylogenetic approaches

article

Metagenome survey of a multispecies and alga-associated biofilm revealed key elements of bacterial-algal interactions in photobioreactors

scientific article (publication date: October 2013)

Microbial diversity and biochemical potential encoded by thermal spring metagenomes derived from the Kamchatka Peninsula

scientific article

Modularity and predicted functions of the global sponge-microbiome network

scientific article published on 01 March 2019

Phaeobacter inhibens from the Roseobacter clade has an environmental niche as a surface colonizer in harbors

scientific article published on 14 August 2015

Primary Production in the Water Column as Major Structuring Element of the Biogeographical Distribution and Function of Archaea in Deep-Sea Sediments of the Central Pacific Ocean

scientific article published on 03 March 2019

RNA-based assessment of diversity and composition of active archaeal communities in the German Bight

scientific article

Respiratory microbiota of humpback whales may be reduced in diversity and richness the longer they fast

scientific article published on 28 July 2020

Rhodobacteraceae on the marine brown alga Fucus spiralis are abundant and show physiological adaptation to an epiphytic lifestyle

scientific article published on 15 June 2017

Tax4Fun2: a R-based tool for the rapid prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene marker gene sequences

article

Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data

scientific article

The Biogeographical Distribution of Benthic Roseobacter Group Members along a Pacific Transect Is Structured by Nutrient Availability within the Sediments and Primary Production in Different Oceanic Provinces.

scientific article

The Effects of Cropping Regimes on Fungal and Bacterial Communities of Wheat and Faba Bean in a Greenhouse Pot Experiment Differ between Plant Species and Compartment

scientific article

The Majority of Active in Marine Sediments Belong to Uncultured Genera: A Molecular Approach to Link Their Distribution to Environmental Conditions

scientific article published in 2019

The green impact: bacterioplankton response toward a phytoplankton spring bloom in the southern North Sea assessed by comparative metagenomic and metatranscriptomic approaches

scientific article published on 11 August 2015

The impact of even-aged and uneven-aged forest management on regional biodiversity of multiple taxa in European beech forests

article by Peter Schall et al published 30 June 2017 in Journal of Applied Ecology

Trophic and Non-Trophic Interactions in a Biodiversity Experiment Assessed by Next-Generation Sequencing

scientific article published on 9 February 2016

List of works by Bernd Wemheuer

A comparative metagenome survey of the fecal microbiota of a breast- and a plant-fed Asian elephant reveals an unexpectedly high diversity of glycoside hydrolase family enzymes

Adaptation of an abundant Roseobacter RCA organism to pelagic systems revealed by genomic and transcriptomic analyses

Agroforestry Management Systems Drive the Composition, Diversity, and Function of Fungal and Bacterial Endophyte Communities in Theobroma Cacao Leaves

Assembly processes of trophic guilds in the root mycobiome of temperate forests

Assessing Bacterial and Fungal Diversity in the Plant Endosphere.

Bacterial community dynamics during polysaccharide degradation at contrasting sites in the Southern and Atlantic Oceans

Bacterial endophyte communities of three agricultural important grass species differ in their response towards management regimes

Biogeography and environmental genomics of the Roseobacter-affiliated pelagic CHAB-I-5 lineage

Biogeography of the human ocular microbiota

Comparative Genomics Reveals Ecological and Evolutionary Insights into Sponge-Associated Thaumarchaeota

Complementary Metaproteomic Approaches to Assess the Bacterioplankton Response toward a Phytoplankton Spring Bloom in the Southern North Sea.

Deciphering associations between dissolved organic molecules and bacterial communities in a pelagic marine system

Deciphering bacterial and fungal endophyte communities in leaves of two maple trees with green islands

Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies

Diet and diet-associated bacteria shape early microbiome development in Yellowtail Kingfish (Seriola lalandi)

Different response of bacteria, archaea and fungi to process parameters in nine full-scale anaerobic digesters

Distinct compositions of free-living, particle-associated and benthic communities of the Roseobacter group in the North Sea.

Distinct relationships between fluorescence in situ hybridization and 16S rRNA gene- and amplicon-based sequencing data of bacterioplankton lineages

Draft Genome Sequence of Pseudomonas putida Strain GM4FR, an Endophytic Bacterium Isolated from Festuca rubra L

Draft Genome Sequence of the Endophyte Bacillus mycoides Strain GM6LP Isolated from Lolium perenne

Draft Genome Sequence of the Endophyte Paenibacillus sp. Strain GM2FR Isolated from Festuca rubra

Driving forces of soil bacterial community structure, diversity, and function in temperate grasslands and forests

Editorial: Molecular Ecology and Genetic Diversity of the Roseobacter Clade.

Effects of Fertilization and Sampling Time on Composition and Diversity of Entire and Active Bacterial Communities in German Grassland Soils

Extraction of Total DNA and RNA from Marine Filter Samples and Generation of a cDNA as Universal Template for Marker Gene Studies.

First Insights into the Draft Genome Sequence of the Endophyte Paenibacillus amylolyticus Strain GM1FR, Isolated from Festuca rubra L.

Fungal Endophyte Communities of Three Agricultural Important Grass Species Differ in Their Response Towards Management Regimes

Gut Microbiota in Children With Cystic Fibrosis: A Taxonomic and Functional Dysbiosis

Gut microbiota in neonates with congenital gastrointestinal surgical conditions: a prospective study

High abundance of heterotrophic prokaryotes in hydrothermal springs of the Azores as revealed by a network of 16S rRNA gene-based methods

Identification and Visualization of a Distinct Microbiome in Ocular Surface Conjunctival Tissue

Impact of Viral Lysis on the Composition of Bacterial Communities and Dissolved Organic Matter in Deep-Sea Sediments

Impact of a phytoplankton bloom on the diversity of the active bacterial community in the southern North Sea as revealed by metatranscriptomic approaches

Linking Compositional and Functional Predictions to Decipher the Biogeochemical Significance in DFAA Turnover of Abundant Bacterioplankton Lineages in the North Sea.

MetaCHIP: community-level horizontal gene transfer identification through the combination of best-match and phylogenetic approaches

Metagenome survey of a multispecies and alga-associated biofilm revealed key elements of bacterial-algal interactions in photobioreactors

Microbial diversity and biochemical potential encoded by thermal spring metagenomes derived from the Kamchatka Peninsula

Modularity and predicted functions of the global sponge-microbiome network

Phaeobacter inhibens from the Roseobacter clade has an environmental niche as a surface colonizer in harbors

Primary Production in the Water Column as Major Structuring Element of the Biogeographical Distribution and Function of Archaea in Deep-Sea Sediments of the Central Pacific Ocean

RNA-based assessment of diversity and composition of active archaeal communities in the German Bight

Respiratory microbiota of humpback whales may be reduced in diversity and richness the longer they fast

Rhodobacteraceae on the marine brown alga Fucus spiralis are abundant and show physiological adaptation to an epiphytic lifestyle

Tax4Fun2: a R-based tool for the rapid prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene marker gene sequences

Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data

The Biogeographical Distribution of Benthic Roseobacter Group Members along a Pacific Transect Is Structured by Nutrient Availability within the Sediments and Primary Production in Different Oceanic Provinces.

The Effects of Cropping Regimes on Fungal and Bacterial Communities of Wheat and Faba Bean in a Greenhouse Pot Experiment Differ between Plant Species and Compartment

The Majority of Active in Marine Sediments Belong to Uncultured Genera: A Molecular Approach to Link Their Distribution to Environmental Conditions

The green impact: bacterioplankton response toward a phytoplankton spring bloom in the southern North Sea assessed by comparative metagenomic and metatranscriptomic approaches

The impact of even-aged and uneven-aged forest management on regional biodiversity of multiple taxa in European beech forests

Trophic and Non-Trophic Interactions in a Biodiversity Experiment Assessed by Next-Generation Sequencing