List of works - Yan He

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

scientific article

Comparison of the levels of bacterial diversity in freshwater, intertidal wetland, and marine sediments by using millions of illumina tags.

scientific article

Regional variation limits applications of healthy gut microbiome reference ranges and disease models

scientific article published on 27 August 2018

Dysbiosis of Gut Microbiota With Reduced Trimethylamine-N-Oxide Level in Patients With Large-Artery Atherosclerotic Stroke or Transient Ischemic Attack.

scientific article published on 23 November 2015

Open-Source Sequence Clustering Methods Improve the State Of the Art.

scientific article

Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity

scientific article published on May 20, 2015

Diverse vaginal microbiomes in reproductive-age women with vulvovaginal candidiasis

scientific article

Homogeneity of the vaginal microbiome at the cervix, posterior fornix, and vaginal canal in pregnant Chinese women

scientific article

Comparison of microbial diversity determined with the same variable tag sequence extracted from two different PCR amplicons

scientific article

Fructooligosaccharide (FOS) and Galactooligosaccharide (GOS) Increase Bifidobacterium but Reduce Butyrate Producing Bacteria with Adverse Glycemic Metabolism in healthy young population.

scientific article published on 18 September 2017

Two-stage clustering (TSC): a pipeline for selecting operational taxonomic units for the high-throughput sequencing of PCR amplicons

scientific article

The Potential Effect of Oral Microbiota in the Prediction of Mucositis During Radiotherapy for Nasopharyngeal Carcinoma

scientific article

Linking gut microbiota, metabolic syndrome and economic status based on a population-level analysis

article published in 2018

Stroke Dysbiosis Index (SDI) in Gut Microbiome Are Associated With Brain Injury and Prognosis of Stroke

scientific article published on 24 April 2019

Different Dynamic Patterns of β-Lactams, Quinolones, Glycopeptides and Macrolides on Mouse Gut Microbial Diversity

scientific article published on 13 May 2015

Higher Risk of Stroke Is Correlated With Increased Opportunistic Pathogen Load and Reduced Levels of Butyrate-Producing Bacteria in the Gut

scientific article published on 04 February 2019

Bacteroides fragilis Protects Against Antibiotic-Associated Diarrhea in Rats by Modulating Intestinal Defenses

scientific article

Oropharyngeal and Sputum Microbiomes Are Similar Following Exacerbation of Chronic Obstructive Pulmonary Disease

scientific article published on 22 June 2017

Disordered intestinal microbes are associated with the activity of Systemic Lupus Erythematosus

scientific article published on 01 April 2019

Dysbiosis of the intestinal microbiota in neurocritically ill patients and the risk for death.

scientific article

Erratum to: Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity

scientific article published on July 31, 2015

Distribution characteristics of trimethylamine N-oxide and its association with gut microbiota

scientific article

Gut microbiota partially mediates the effects of fine particulate matter on type 2 diabetes: Evidence from a population-based epidemiological study

scientific article published on 12 June 2019

Long-term consumption of caffeine-free high sucrose cola beverages aggravates the pathogenesis of EAE in mice

scientific article

Illumina sequencing 16S rRNA tagging reveals diverse vaginal microbiomes associated with bacterial vaginosis

scientific article published on May 1, 2013

A machine learning model using gut microbiome data for predicting changes of trimethylamine-N-oxide in healthy volunteers after choline consumption

scientific article

Effect of intermittent fasting on physiology and gut microbiota in presenium rats

scientific article published in April 2016

Large-scale characterisation of the pregnancy vaginal microbiome and sialidase activity in a low-risk Chinese population

scientific article published on 20 December 2021

Longitudinal analysis of vaginal microbiota in women with recurrent vulvovaginal candidiasis

scientific article published in February 2016

List of works by Yan He

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

Comparison of the levels of bacterial diversity in freshwater, intertidal wetland, and marine sediments by using millions of illumina tags.

Regional variation limits applications of healthy gut microbiome reference ranges and disease models

Dysbiosis of Gut Microbiota With Reduced Trimethylamine-N-Oxide Level in Patients With Large-Artery Atherosclerotic Stroke or Transient Ischemic Attack.

Open-Source Sequence Clustering Methods Improve the State Of the Art.

Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity

Diverse vaginal microbiomes in reproductive-age women with vulvovaginal candidiasis

Homogeneity of the vaginal microbiome at the cervix, posterior fornix, and vaginal canal in pregnant Chinese women

Comparison of microbial diversity determined with the same variable tag sequence extracted from two different PCR amplicons

Fructooligosaccharide (FOS) and Galactooligosaccharide (GOS) Increase Bifidobacterium but Reduce Butyrate Producing Bacteria with Adverse Glycemic Metabolism in healthy young population.

Two-stage clustering (TSC): a pipeline for selecting operational taxonomic units for the high-throughput sequencing of PCR amplicons

The Potential Effect of Oral Microbiota in the Prediction of Mucositis During Radiotherapy for Nasopharyngeal Carcinoma

Linking gut microbiota, metabolic syndrome and economic status based on a population-level analysis

Stroke Dysbiosis Index (SDI) in Gut Microbiome Are Associated With Brain Injury and Prognosis of Stroke

Different Dynamic Patterns of β-Lactams, Quinolones, Glycopeptides and Macrolides on Mouse Gut Microbial Diversity

Higher Risk of Stroke Is Correlated With Increased Opportunistic Pathogen Load and Reduced Levels of Butyrate-Producing Bacteria in the Gut

Bacteroides fragilis Protects Against Antibiotic-Associated Diarrhea in Rats by Modulating Intestinal Defenses

Oropharyngeal and Sputum Microbiomes Are Similar Following Exacerbation of Chronic Obstructive Pulmonary Disease

Disordered intestinal microbes are associated with the activity of Systemic Lupus Erythematosus

Dysbiosis of the intestinal microbiota in neurocritically ill patients and the risk for death.

Erratum to: Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity

Distribution characteristics of trimethylamine N-oxide and its association with gut microbiota

Gut microbiota partially mediates the effects of fine particulate matter on type 2 diabetes: Evidence from a population-based epidemiological study

Long-term consumption of caffeine-free high sucrose cola beverages aggravates the pathogenesis of EAE in mice

Illumina sequencing 16S rRNA tagging reveals diverse vaginal microbiomes associated with bacterial vaginosis

A machine learning model using gut microbiome data for predicting changes of trimethylamine-N-oxide in healthy volunteers after choline consumption

Effect of intermittent fasting on physiology and gut microbiota in presenium rats

Large-scale characterisation of the pregnancy vaginal microbiome and sialidase activity in a low-risk Chinese population

Longitudinal analysis of vaginal microbiota in women with recurrent vulvovaginal candidiasis