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List of works by Qiyun Zhu

A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria

scientific article published on 06 January 2021

A communal catalogue reveals Earth's multiscale microbial diversity

scientific article published in November 2017

A gut-derived metabolite alters brain activity and anxiety behaviour in mice

scientific article

American Gut: an Open Platform for Citizen Science Microbiome Research

article

Are microbiome studies ready for hypothesis-driven research?

scientific article published on 27 July 2018

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 September 2019

Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity

scientific article published on 18 August 2020

Bartonella spp. in fruit bats and blood-feeding Ectoparasites in Madagascar

scientific article

Best practices for analysing microbiomes

scientific article published on 01 July 2018

Calour: an Interactive, Microbe-Centric Analysis Tool

Chemically informed analyses of metabolomics mass spectrometry data with Qemistree

scientific article published on 16 November 2020

Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort

scientific article published on 13 September 2020

Creating a 3D microbial and chemical snapshot of a human habitat

scientific article published on 27 February 2018

EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets

scientific article published on 15 March 2021

Enhancing untargeted metabolomics using metadata-based source annotation

scientific article published in 2022

Evaluating Metagenomic Prediction of the Metaproteome in a 4.5-Year Study of a Patient with Crohn's Disease

Evaluating the Information Content of Shallow Shotgun Metagenomics

scientific article published on 13 November 2018

Expanding magnetic organelle biogenesis in the domain Bacteria

scientific article published on 30 October 2020

FXR Regulates Intestinal Cancer Stem Cell Proliferation

scientific article published on 01 February 2019

Fleas (Siphonaptera) are Cretaceous, and evolved with Theria

scientific article published on 15 May 2015

Genomic inference of the metabolism and evolution of the archaeal phylum Aigarchaeota

scientific article published in Nature Communications

Gut microbiome and magnetic resonance spectroscopy study of subjects at ultra-high risk for psychosis may support the membrane hypothesis

scientific article published on 02 June 2018

Home chemical and microbial transitions across urbanization

scientific article published on 04 November 2019

Horizontal transfers and gene losses in the phospholipid pathway of bartonella reveal clues about early ecological niches

scientific article

Improved accuracy of supervised CRM discovery with interpolated Markov models and cross-species comparison.

scientific article published on 5 August 2011

KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples.

scientific article published on 13 March 2018

Metagenomics-Based, Strain-Level Analysis of Escherichia coli From a Time-Series of Microbiome Samples From a Crohn's Disease Patient

scientific article published on 30 October 2018

Methods for phylogenetic analysis of microbiome data

scientific article published on 24 May 2018

Microbial effects of livestock manure fertilization on freshwater aquaculture ponds rearing tilapia (Oreochromis shiranus) and North African catfish (Clarias gariepinus)

scientific article published on 31 August 2018

Microbiome analyses of blood and tissues suggest cancer diagnostic approach

scientific article published on 11 March 2020

On the probability of dinosaur fleas

scientific article

Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads

scientific article published on 31 October 2019

Origin of microbial biomineralization and magnetotaxis during the Archean

scientific article published on 13 February 2017

Paired microbiome and metabolome analyses associate bile acid changes with colorectal cancer progression

scientific article published on 29 August 2023

Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea

scientific article published on 02 December 2019

Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy

scientific article published on 04 April 2022

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0.

scientific article published on 19 May 2020

QIIME 2 Enables Comprehensive End-to-End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data

scientific article published on 01 June 2020

Reply to Wang and Chen: An ancient origin of magnetotactic bacteria.

scientific article published on 12 June 2017

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 August 2019

SHOGUN: a modular, accurate, and scalable framework for microbiome quantification

scientific article published on 04 May 2020

The origin of Chinese domestic horses revealed with novel mtDNA variants

scientific article published on 13 April 2016

Web-based bioinformatics workflows for end-to-end RNA-seq data computation and analysis in agricultural animal species

scientific article

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